| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,247,107 – 14,247,200 |
| Length | 93 |
| Max. P | 0.515944 |
| Location | 14,247,107 – 14,247,200 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 88.43 |
| Shannon entropy | 0.22295 |
| G+C content | 0.49047 |
| Mean single sequence MFE | -26.82 |
| Consensus MFE | -18.91 |
| Energy contribution | -20.35 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14247107 93 - 24543557 CCUACUUCAUAAUUAAGUAAUCUCCCCGACUAUGCAGCUCACCUUAAGCUGUCAACUGGGAGAACGACUUGGAAUCGCU-GGAGACGGAAGACA ....((((....((((((..((((((.(.....((((((.......))))))...).))))))...))))))......(-(....))))))... ( -26.00, z-score = -2.20, R) >droSim1.chr3L 13602009 93 - 22553184 CCUACUUCAUAAUUAAGUAAUCUCCCCGACUAUGCAGCUCACCUUAAGCUGCCAACUGGGAGAACGACUUGGUAUCGCA-GGGGACGGAAGACA ....((((...(((((((..((((((.(.....((((((.......))))))...).))))))...)))))))......-(....).))))... ( -29.00, z-score = -2.48, R) >droSec1.super_0 6394184 92 - 21120651 CCUACUUCAUAAUUAAGUAAUCUCCCCGACUAUGCAGCUCACCUUAAGCUGCCAACUGGGAGAACGAC-UGGAAUCGCA-GGGGACGGAAGACA ....((((.......(((..((((((.(.....((((((.......))))))...).))))))...))-).........-(....).))))... ( -25.20, z-score = -1.49, R) >droYak2.chr3L 14344987 94 - 24197627 CCUACUUCAUAAUUAAGUAAUCUCCCCGACUAUGCAGCUCACCUUAAGCUGCCAACUGGGAGAACGACUUGGAAUCGCUAGGGGACGGAAGAUA ....((((....((((((..((((((.(.....((((((.......))))))...).))))))...))))))........(....).))))... ( -27.70, z-score = -2.16, R) >droEre2.scaffold_4784 14238513 93 - 25762168 CCUCCUUCAUAAUUAAGUAAUCUCCCCAACUAUUCAGCUCACCUUAAGCUGCCAACUGGGAGAACGACUUGGAAUCGCU-GGGGAGGCAAGAUA (((((((.....((((((..((((((........(((((.......)))))......))))))...)))))).......-)))))))....... ( -26.74, z-score = -1.67, R) >droAna3.scaffold_13337 18489130 86 + 23293914 GUCACUUCAUAAUUAAGUAAUCCCCCCGACUAUUCGGCUCACCUUAAGCUGCCAACUGGGAGUAAGACUAGGGAGCC---GGAGCCGGA----- .........................(((....((((((((.(((...(((.((....)).)))......))))))))---)))..))).----- ( -26.30, z-score = -1.14, R) >consensus CCUACUUCAUAAUUAAGUAAUCUCCCCGACUAUGCAGCUCACCUUAAGCUGCCAACUGGGAGAACGACUUGGAAUCGCU_GGGGACGGAAGACA ....((((....((((((..((((((.......((((((.......)))))).....))))))...))))))........(....).))))... (-18.91 = -20.35 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:24 2011