| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,226,624 – 14,226,732 |
| Length | 108 |
| Max. P | 0.822601 |
| Location | 14,226,624 – 14,226,732 |
|---|---|
| Length | 108 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 60.66 |
| Shannon entropy | 0.85735 |
| G+C content | 0.42596 |
| Mean single sequence MFE | -24.44 |
| Consensus MFE | -12.21 |
| Energy contribution | -11.87 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.28 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.822601 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14226624 108 + 24543557 -----AUUGAAUAUCAUUUUCGAUUGAAA-CAGAAUUGAGUU--UGACUUUUGUACUUUCCAGUGCUGCUGUGUUUCGUCUUCACCACAGCGCAGGUUGUGCCAAAUGCAGAAAUC -----...(((..(((..(((((((....-...)))))))..--)))..)))((((...((.((((((..(((.........)))..)))))).))..)))).............. ( -25.10, z-score = -0.50, R) >droGri2.scaffold_15110 21437378 110 + 24565398 ---CGUCAUAUUCAUAAUCUCUGCUUCCAGUCCCGACUAAC---CUUUGAAUACUCCUUGCAGUGCUGCUGUGUUAUGAUUGCAACGCAGCGCAGGUGAUGCCAACUACAGAAAUU ---((((((...........((((....(((..(((.....---..)))...)))....))))(((.((((((((........))))))))))).))))))............... ( -23.30, z-score = -0.09, R) >droMoj3.scaffold_6680 8059018 108 - 24764193 CUCUCAUCUAAAUAUAACCCAAGCAGAUCAUCUCA-----U---AUCUUCUAUCUCUUCUUAGUGCUGCUGUGCUCCGCGUUUGUCACAGCGCAGGUGAAGCCAAAUGAAGAGAUC .....................((.((((.......-----.---)))).))((((((((....(((.(((((((.........).)))))))))((.....))....)))))))). ( -24.80, z-score = -1.11, R) >droVir3.scaffold_13049 3121267 113 - 25233164 CUCAGCUCGAAAUGUAUUGGCAGCAUCCAGUCUCACUUGAU---AUCUUACAUGUCUUCGUAGUGCUGCUGUCUUCCGUAUUUGUCACAGCGCAGGUGAAGCCAAGUACAGAGAUC .....(((....(((((((((.((.....)).(((((((((---((.....)))))......((((((.((.(..........).)))))))))))))).))).)))))))))... ( -27.30, z-score = 0.19, R) >droWil1.scaffold_180949 3513663 111 + 6375548 -----GCCGAAAAUUGCUCAAGGAUAAACUUUUAACUUAAUCAAUUACAUCUUUACACUUUAGUGUGGCUGUGUUCGGUUGUGAUCGCAGCACAGGUUGUGCCACAUACAGAAAUU -----(((((((((((...(((.............)))...))))).(((..((((((....))))))..)))))))))((((..((((((....)))))).)))).......... ( -24.32, z-score = -0.41, R) >droPer1.super_41 274045 103 + 728894 ------CUGGUAUAUACUCAUAUGAUCCGAUCCUUAAUUAUC-GAAUCUUCUUCUCUUUUUAGUGCUGCUGUGCUUCGC------UACAGCGCAGGUUGUGCCAAAUGCAGAGAUC ------.(((((((.(((.....(((.((((........)))-).)))..............((((((..(((...)))------..)))))).))))))))))............ ( -23.60, z-score = -0.68, R) >dp4.chrXR_group6 6916125 103 + 13314419 ------CUGGUAUAUACUCAUAUGAUCCGAUCCUUACUUAUU-GAAUCUUUUUCUCUUUUUAGUGCUGCUGUGCUUCGC------UACAGCGCAGGUUGUGCCAAAUGCAGAGAUC ------.(((((((.(((.....(((.((((........)))-).)))..............((((((..(((...)))------..)))))).))))))))))............ ( -21.50, z-score = -0.05, R) >droAna3.scaffold_13337 18465622 106 - 23293914 ----UCCCUUUAUCCUUUUGCAUUUCUUGUUUUAAUUUAAUUCAAAAUUUCUUC------CAGUGCUGCUGUGUUUUGUCUUCGCCACAGCGCAGGUUGUGCCAAAUACAGAGAUC ----...((((....(((.((((..(((((...(((((......))))).....------.......((((((............)))))))))))..)))).)))...))))... ( -17.80, z-score = -0.58, R) >droYak2.chr3L 14324192 108 + 24197627 -----GCUGAUUUUCAUUUUCGAUGGGAA-CAGAACUGAGUU--UGACUUUUGUGUUUUCCAGUGCUGCUGUGUUUCGUCUUCGCCACAGCGCAGGUUGUGCCAAAUGCAGAAAUC -----...(((((((((((..((((..((-(((.((((.(..--.(((......)))..)))))....)))).)..))))...(.((((((....)))))).))))))..)))))) ( -27.00, z-score = 0.40, R) >droEre2.scaffold_4784 14218713 107 + 25762168 -----GCUGAAUAGCAUUUUCGAUUGGA--CAGGAUUGAGUU--UGACUCUUGUGUUUUCCAGUGCUGCUGUGUUUCGUCUUCGCCACAGCGCAGGUUGUGCCAAAUGCAGAAAUC -----.(((....((((..((.((((((--.((.((.(((..--...)))..)).)).))))))((.((((((...((....)).)))))))).))..))))......)))..... ( -29.10, z-score = -0.02, R) >droSec1.super_0 6372476 108 + 21120651 -----AUAGAAUAUCAUUUUCGAUUGAAA-CAGAAUUGAGUU--UGACUUUUGCACUUUCCAGUGCUGCUGUGUUUCGUCUUCACCACAGCGCAGGUUGUGCCAAAUGCAGAAAUC -----...(((..(((..(((((((....-...)))))))..--)))..)))((((...((.((((((..(((.........)))..)))))).))..)))).............. ( -27.20, z-score = -1.01, R) >droSim1.chr3L 13581870 108 + 22553184 -----AUUGAAUAUCAUUUUCGAUUGAAA-CAGAAUUGAGUU--UUACUUUUGUGCUUUCCAGUGCUGCUGUGUUUCGUCUUCACCACAGCGCAGGUUGUGCCAAAUGCAGAAAUC -----((((((.......))))))(((((-(........)))--)))..(((.(((......((((((..(((.........)))..)))))).((.....))....))).))).. ( -22.30, z-score = 0.44, R) >consensus _____ACUGAAAUUCAUUUUCGAUUGAAA_UAGAAUUUAAUU__UUACUUUUUCUCUUUCCAGUGCUGCUGUGUUUCGUCUUCACCACAGCGCAGGUUGUGCCAAAUGCAGAAAUC ...............................................................(((.((((((............)))))))))((.....))............. (-12.21 = -11.87 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:20 2011