| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,216,608 – 14,216,724 |
| Length | 116 |
| Max. P | 0.539693 |
| Location | 14,216,608 – 14,216,724 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 86.38 |
| Shannon entropy | 0.25574 |
| G+C content | 0.40352 |
| Mean single sequence MFE | -27.87 |
| Consensus MFE | -19.49 |
| Energy contribution | -20.49 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.539693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14216608 116 + 24543557 CAGUCACAAAUGUGAGCUAUUUAUGCUAAACAAGUCAAUCUUUAUGGCUCCACAUAAAUGCUUUAUCUGGGAACGCAUAAACUCGAAUAGUUCCCG-AGAUAGCGCGUGUGCAUUCA ..(.(((..(((((((((((...((((.....)).))......)))))).)))))..((((.((((((((((((...............)))))).-)))))).))))))))..... ( -32.06, z-score = -2.63, R) >droAna3.scaffold_13337 18456791 117 - 23293914 CAGUCACAAAUUAGACAUAUUUAUGCUAAAAAAGUCACUCUUUAUGGCACCGCAUAAAUGCUUUACGGAGAAAUACAUAAAACCUAAUAGUUCCCCCGACUAGCGAGUGUGCGUGCA .(((.((...((((.(((....)))))))....)).))).......((((.(((((..((((...(((.(((..................)))..)))...))))..))))))))). ( -23.07, z-score = -0.96, R) >droEre2.scaffold_4784 14208998 114 + 25762168 --ACCACAAAUGUGAGCUAUUUAUGCUAAACAAGUCAGUCUUUAUGGCUACGCAUAAAUGCAUUAUAUGGGAACUCAUAAACUCGAAUAGUUCCCG-AGCUAGCGCGUGUGCAUCCA --..((((..(((.((((((((((((......(((((.......)))))..))))))))........((((((((.((........))))))))))-)))).)))..))))...... ( -30.90, z-score = -2.02, R) >droYak2.chr3L 14314388 114 + 24197627 --GCCACAAAUGUGAGCUAUUUAUGCUAAACAAGUCAAUCUUUAUGGCUCCACAUAAAUGCAUUAUCUGGGAACUCAUAAACUCGAAUAGUUCUCG-AGCUGGCGCGUGUGCAUCCA --(((((..(((((((((((...((((.....)).))......)))))).)))))....((....((.(((((((.((........))))))))))-)....))..))).))..... ( -26.70, z-score = -0.90, R) >droSec1.super_0 6362914 114 + 21120651 --GCCACAAAUGUGAGCUAUUUAUGCUAAACAAGUCAAUCUUAAUGGCUUCACAUAAAUACUUUAUCUGGGAACGCAUAAACUCUAAUAGUUCCCG-AGCUAGCGCGUGUGCGUUCA --(((((....))).))((((((((......((((((.......))))))..))))))))..........(((((((((........(((((....-))))).....))))))))). ( -28.02, z-score = -1.75, R) >droSim1.chr3L 13571867 114 + 22553184 --ACCACAAAUGUGAGCUAUUUAUGCUAAACAAGUCAAUCUUUAUGGCUCCACAUAAAUGCUUUAUCUGGGAACGCAUAAACUCUAAUAGUUCCCA-AACUAGCGCGUGUGCAUUCA --..((((.(((((((((((...((((.....)).))......)))))).)))))....(((.....(((((((...............)))))))-....)))...))))...... ( -26.46, z-score = -2.18, R) >consensus __GCCACAAAUGUGAGCUAUUUAUGCUAAACAAGUCAAUCUUUAUGGCUCCACAUAAAUGCUUUAUCUGGGAACGCAUAAACUCGAAUAGUUCCCG_AGCUAGCGCGUGUGCAUUCA ..(((((..(((((((((((...((((.....)).))......)))))).)))))...((((.....(((((((...............))))))).....)))).))).))..... (-19.49 = -20.49 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:18 2011