| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,221,977 – 5,222,097 |
| Length | 120 |
| Max. P | 0.663783 |
| Location | 5,221,977 – 5,222,097 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.42 |
| Shannon entropy | 0.28165 |
| G+C content | 0.32472 |
| Mean single sequence MFE | -18.84 |
| Consensus MFE | -12.02 |
| Energy contribution | -12.92 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663783 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5221977 120 + 23011544 CCACAAUCUUUCAUUGGGAUUAAGUACAGUAGUAAACUGCUAACAUUGUUUCCUAAAAACACUAGUUACUGCUUCUCUUCCAACCUUAAUUAUAAUCUCCUUAAUCCUGAUCAUAAAUCC ............((..((((((((...(((((....)))))(((..(((((.....)))))...)))................................))))))))..))......... ( -18.50, z-score = -2.47, R) >droSim1.chr2L 5020527 120 + 22036055 CCACAAUCUUUCAUUGGGAUUAAGUACAGUAGUAAACUGCUAACAUUGUUUUCUAAAAACACUAGUUACUGCUCCUCUUCCAACCUUAAUUAUAAUCUCCUUAAUCCUGAUCAUAAAUCC ............((..((((((((...(((((....)))))(((..(((((.....)))))...)))................................))))))))..))......... ( -18.60, z-score = -2.51, R) >droSec1.super_5 3302875 120 + 5866729 CCACAAUCUUUCAUUGGGAUUAAGUACAGUAGUAAACUGCUAACAUUGUUUCCUAAAAACACUAGUUACUGCUCCUCUUCCAACCUUAAUUAUAAUCUCCUUAAUCCUGAUCAUAAAUCC ............((..((((((((...(((((....)))))(((..(((((.....)))))...)))................................))))))))..))......... ( -18.50, z-score = -2.52, R) >droYak2.chr2L 8347081 120 - 22324452 CCGCAAUCAUUCAUUGGGAUUAGUUACAGAAGUAACCUGCUAACAAUGUUUCCUAAAAAUACUAGUUAUGGCUACUAUUUGAACAUUAAUUAUAAUCUCCUUAAUCUUGCUCAUAAAUGU ..((((.........((((((((((((((.......))).))))(((((((.....(((((.((((....)))).)))))))))))).....))))))).......)))).......... ( -20.39, z-score = -1.26, R) >droEre2.scaffold_4929 5300718 101 + 26641161 CCACAAUCGUUCAUUGGGAUUAGGUAUAUAAGUGAACUGCUAACAAUGU--------------AGU----GCUACU-UUUUAACAUUAAUUAUAAUCUCCUUAAUCCUGAUCAUAAAUGU ............((..((((((((.....(((((.(((((.......))--------------)))----..))))-)......((((....))))...))))))))..))......... ( -18.20, z-score = -1.18, R) >consensus CCACAAUCUUUCAUUGGGAUUAAGUACAGUAGUAAACUGCUAACAUUGUUUCCUAAAAACACUAGUUACUGCUACUCUUCCAACCUUAAUUAUAAUCUCCUUAAUCCUGAUCAUAAAUCC ............((((((((((((...(((((....)))))......................(((....)))..........................))))))))))))......... (-12.02 = -12.92 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:20 2011