Locus 7349

Sequence ID dm3.chr3L
Location 14,202,136 – 14,202,238
Length 102
Max. P 0.500000
window10123

overview

Window 3

Location 14,202,136 – 14,202,238
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 80.17
Shannon entropy 0.34233
G+C content 0.43371
Mean single sequence MFE -22.97
Consensus MFE -12.57
Energy contribution -12.71
Covariance contribution 0.14
Combinations/Pair 1.23
Mean z-score -1.86
Structure conservation index 0.55
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.01
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chr3L 14202136 102 - 24543557
UCACCUGACAAAGGGACUCGUCUCAUAACGAGUUAACUCUUUACACAGAAGUGGCAACCAGUUUAACGUAUGUACAUACAUAUGUAUAUACUUGUUACGAGG
...(((.....)))(((((((......)))))))..(((...(((..(((.(((...))).)))...((((((((((....)))))))))).)))...))). ( -28.10, z-score =  -2.87, R)
>droSim1.chr3L 13557703 93 - 22553184
UCACCUGACAAAGGGACUCGUCUCAUAACGAGUUAACUCUUUACACAGAAGUGGCAACCAGUUUGACGUAC---------UACGUACAUACUUGUUACGAGG
...(((.....)))(((((((......)))))))..(((....(((....)))(.(((.(((.(((((...---------..))).)).))).))).)))). ( -23.20, z-score =  -1.34, R)
>droSec1.super_0 6348665 93 - 21120651
UCACCUGACAAAGGGACUCGUCUCAUAACGAGUUAACUCUUUACACAGAAGUGGCAACCAGUUUGACGUAC---------UACGUACAUACUUGUUACGAGG
...(((.....)))(((((((......)))))))..(((....(((....)))(.(((.(((.(((((...---------..))).)).))).))).)))). ( -23.20, z-score =  -1.34, R)
>droYak2.chr3L 14299709 82 - 24197627
GCACCUGACAGAGGAACUCGUCUCAUAACGAGUUAACUCUUUACGCAGAAGUGGCAACCAGUUUGCCG--------------------UACUUGUUACGAGG
...((((((((((.(((((((......)))))))..)))..((((((((...(....)...)))).))--------------------))..))))...))) ( -21.00, z-score =  -0.81, R)
>droEre2.scaffold_4784 14194416 80 - 25762168
--ACCUGACAAAGGGACCCGUCUCAUAACGAGUUAACUCUUUACACAAAAGUGGCAACCAGUUUGCCA--------------------UACUUGUUGCGAGG
--.(((.....))).......(((.((((((((.....((((.....))))((((((.....))))))--------------------.)))))))).))). ( -20.30, z-score =  -1.39, R)
>droAna3.scaffold_13337 18442401 82 + 23293914
UCACCUGACAAUGGGAACCUCCUCAUAACAAGUUGAAUCUUUACACAGAAAUAUCAACCUGUUUGACU--------------------UACUUGUUAUGAGG
...(((......))).....(((((((((((((.((.((.....((((..........))))..)).)--------------------)))))))))))))) ( -22.00, z-score =  -3.43, R)
>consensus
UCACCUGACAAAGGGACUCGUCUCAUAACGAGUUAACUCUUUACACAGAAGUGGCAACCAGUUUGACG____________________UACUUGUUACGAGG
...(((.....)))......((((.((((((((.((((.....(((....)))......))))..........................)))))))).)))) (-12.57 = -12.71 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:17 2011