Locus 7346

Sequence ID dm3.chr3L
Location 14,176,195 – 14,176,290
Length 95
Max. P 0.993745
window10118 window10119

overview

Window 8

Location 14,176,195 – 14,176,290
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 100.00
Shannon entropy -0.00000
G+C content 0.49474
Mean single sequence MFE -30.20
Consensus MFE -30.20
Energy contribution -30.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.80
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.64
SVM RNA-class probability 0.993745
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 14176195 95 + 24543557
CCAUUCAAUCUCCCCGUCAAUCAGUCAGUCAGUCAUUCAGACUUGGCGGCGUCGCCAUCGACGUUUUUGUGGCUGUUGUUGUGGAUUGUUUGCUU
.((..(((((..(....(((.(((((((((((((.....))).))))(((((((....)))))))....)))))))))..)..)))))..))... ( -30.20, z-score =  -2.80, R)
>droSim1.chr3L 13532295 95 + 22553184
CCAUUCAAUCUCCCCGUCAAUCAGUCAGUCAGUCAUUCAGACUUGGCGGCGUCGCCAUCGACGUUUUUGUGGCUGUUGUUGUGGAUUGUUUGCUU
.((..(((((..(....(((.(((((((((((((.....))).))))(((((((....)))))))....)))))))))..)..)))))..))... ( -30.20, z-score =  -2.80, R)
>droSec1.super_0 6323323 95 + 21120651
CCAUUCAAUCUCCCCGUCAAUCAGUCAGUCAGUCAUUCAGACUUGGCGGCGUCGCCAUCGACGUUUUUGUGGCUGUUGUUGUGGAUUGUUUGCUU
.((..(((((..(....(((.(((((((((((((.....))).))))(((((((....)))))))....)))))))))..)..)))))..))... ( -30.20, z-score =  -2.80, R)
>consensus
CCAUUCAAUCUCCCCGUCAAUCAGUCAGUCAGUCAUUCAGACUUGGCGGCGUCGCCAUCGACGUUUUUGUGGCUGUUGUUGUGGAUUGUUUGCUU
.((..(((((..(....(((.(((((((((((((.....))).))))(((((((....)))))))....)))))))))..)..)))))..))... (-30.20 = -30.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 14,176,195 – 14,176,290
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 100.00
Shannon entropy -0.00000
G+C content 0.49474
Mean single sequence MFE -22.11
Consensus MFE -22.11
Energy contribution -22.11
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.12
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.49
SVM RNA-class probability 0.715995
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 14176195 95 - 24543557
AAGCAAACAAUCCACAACAACAGCCACAAAAACGUCGAUGGCGACGCCGCCAAGUCUGAAUGACUGACUGACUGAUUGACGGGGAGAUUGAAUGG
.......(((((..(..((((((.((.......(((..(((((....)))))((((.....))))))))).))).)))....)..)))))..... ( -22.11, z-score =  -1.12, R)
>droSim1.chr3L 13532295 95 - 22553184
AAGCAAACAAUCCACAACAACAGCCACAAAAACGUCGAUGGCGACGCCGCCAAGUCUGAAUGACUGACUGACUGAUUGACGGGGAGAUUGAAUGG
.......(((((..(..((((((.((.......(((..(((((....)))))((((.....))))))))).))).)))....)..)))))..... ( -22.11, z-score =  -1.12, R)
>droSec1.super_0 6323323 95 - 21120651
AAGCAAACAAUCCACAACAACAGCCACAAAAACGUCGAUGGCGACGCCGCCAAGUCUGAAUGACUGACUGACUGAUUGACGGGGAGAUUGAAUGG
.......(((((..(..((((((.((.......(((..(((((....)))))((((.....))))))))).))).)))....)..)))))..... ( -22.11, z-score =  -1.12, R)
>consensus
AAGCAAACAAUCCACAACAACAGCCACAAAAACGUCGAUGGCGACGCCGCCAAGUCUGAAUGACUGACUGACUGAUUGACGGGGAGAUUGAAUGG
.......(((((..(..((((((.((.......(((..(((((....)))))((((.....))))))))).))).)))....)..)))))..... (-22.11 = -22.11 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:14 2011