| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,207,576 – 5,207,680 |
| Length | 104 |
| Max. P | 0.518495 |
| Location | 5,207,576 – 5,207,680 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 93.57 |
| Shannon entropy | 0.08830 |
| G+C content | 0.30968 |
| Mean single sequence MFE | -22.07 |
| Consensus MFE | -20.02 |
| Energy contribution | -20.47 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5207576 104 + 23011544 CUUAAUGGGUGUAAAAAUCAGAACAGUCUUCUCUAGAGCUAAUAUAAGUUACUUUUUGAUGUGAACUUUUUGUUUUUGCAGAAAGUAUAAAGACACGGACAAUA ........((((....(((((((.(((((.....))((((......))))))))))))))....(((((((((....)))))))))......))))........ ( -17.40, z-score = 0.35, R) >droSec1.super_5 3288565 103 + 5866729 CUUAAUAGUUGUAAAAAUCCGAACAGUCUUGUCUAGGGGUAAUAUA-GUUACUUUUUGACGUGAACUUUUUGUUUUUGCAGAAAGUAUAAAGACACGGAAAACA .................((((....((((((((.(((((((((...-))))))))).)))....(((((((((....)))))))))...))))).))))..... ( -25.70, z-score = -2.50, R) >droSim1.chr2L 5004686 103 + 22036055 CUUAAUAGUUGUAAAAAUCAGAACAGUCUUGUCUAGAGGUAAUAUA-GUUACUUUUUGACGUGAACUUUUUGUUUUUGCAGAAAGUAUAAAGACACGGAAAACA .........................((((((((.(((((((((...-))))))))).)))....(((((((((....)))))))))...))))).......... ( -23.10, z-score = -1.72, R) >consensus CUUAAUAGUUGUAAAAAUCAGAACAGUCUUGUCUAGAGGUAAUAUA_GUUACUUUUUGACGUGAACUUUUUGUUUUUGCAGAAAGUAUAAAGACACGGAAAACA .........................((((((((.(((((((((....))))))))).)))....(((((((((....)))))))))...))))).......... (-20.02 = -20.47 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:19 2011