| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,079,286 – 14,079,391 |
| Length | 105 |
| Max. P | 0.681223 |
| Location | 14,079,286 – 14,079,391 |
|---|---|
| Length | 105 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 84.84 |
| Shannon entropy | 0.30535 |
| G+C content | 0.35646 |
| Mean single sequence MFE | -20.14 |
| Consensus MFE | -13.20 |
| Energy contribution | -13.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14079286 105 + 24543557 ------AUACGAAUGCGAUGACAACAAAAAGGCAUAAUAGUAAAAUUAAAUGUGUCUAUUAUGCCAGGCCAAUACAAUGCAUACAUAAAACCACACUCAAACCUAGCAAAA-------- ------....(.(((((.((..........((((((((((....((.....))..)))))))))).........)).))))).)...........................-------- ( -16.91, z-score = -1.36, R) >droEre2.scaffold_4784 14069112 105 + 25762168 ------AUACGAAUGCCAUGACAACAAAAAGGCAUAAUAGUAAAAUUAAAUGUGUCUAUUAUGCCAGGCCAAUACAAUGCAUACAUAAAACCACACGCAAACCUAGCAAAA-------- ------........(((.((....))....((((((((((....((.....))..)))))))))).)))...........................((.......))....-------- ( -17.20, z-score = -1.09, R) >droYak2.chr3L 14169412 101 + 24197627 ------AUACGAAUGCGAUGACAACAAAAAGGCAUAAUAGUAAAAUUAAAUGUGUCUAUUAUGCCAGGCCAAUACAAU----ACAUAAAACCACACUCAAACCCAGCAAAA-------- ------.......(((..............((((((((((....((.....))..)))))))))).((..........----........)).............)))...-------- ( -15.77, z-score = -1.73, R) >droSec1.super_0 6227001 105 + 21120651 ------AUACGAAUGCGAUGACAACAAAAAGGCAUAAUAGUAAAAUUAAAUGUGUCUAUUAUGCCAGGCCAAUACAAUGCAUACAUAAAACCACACUCAAACCUAGCAAAA-------- ------....(.(((((.((..........((((((((((....((.....))..)))))))))).........)).))))).)...........................-------- ( -16.91, z-score = -1.36, R) >droSim1.chr3L 13433746 105 + 22553184 ------AUACGAAUGCGAUGACAACAAAAAGGCAUAAUAGUAAAAUUAAAUGUGUCUAUUAUGCCAGGCCAAUACAAUGCAUACAUAAAACCACACUCAAACCUAGCAAAA-------- ------....(.(((((.((..........((((((((((....((.....))..)))))))))).........)).))))).)...........................-------- ( -16.91, z-score = -1.36, R) >dp4.chrXR_group6 4755264 110 + 13314419 AUACGCGUGUGAAUGCGAUGACAACAAAAAGGCAUAAUAGUAAAAUUAAAUGUGUCUAUUAUGCCAG-CCAAUACAAUGCACACAUAAAACCGCACUCGCACAGAUUCACA-------- ......((((((.((((.............((((((((((....((.....))..)))))))))).(-(.........))...........)))).)))))).........-------- ( -28.50, z-score = -3.10, R) >droPer1.super_9 3056385 110 + 3637205 AUACGCGUGUGAAUGCGAUGACAACAAAAAGGCAUAAUAGUAAAAUUAAAUGUGUCUAUUAUGCCAG-CCAAUACAAUGCACACAUAAAACCGCACUCGCACAGAUUCACA-------- ......((((((.((((.............((((((((((....((.....))..)))))))))).(-(.........))...........)))).)))))).........-------- ( -28.50, z-score = -3.10, R) >droAna3.scaffold_13337 18327261 112 - 23293914 ------AUACGAAUACGAUGACAACAAAAAGGCAUAAUAGUAAAAUUAAAUGUGUCUAUUAUGCCGGGCCAAUACAAUGCACACAUAAAACCGCACUCACACCCA-CAUAGCAGGCCAG ------........................((((((((((....((.....))..)))))))))).((((......(((....)))......((...........-....)).)))).. ( -21.36, z-score = -1.56, R) >droWil1.scaffold_180698 9961842 98 - 11422946 ------AUGCGAAUGCGAUGACAACAAAAAGGCAUAAUAGUAAAAUUAAAUGUGUCUAUUAUGCCAG-------CAAUACACACAUAAAACCACACACAGGGACACCAAAC-------- ------.(((...((......)).......((((((((((....((.....))..)))))))))).)-------)).......................((....))....-------- ( -17.00, z-score = -1.55, R) >droMoj3.scaffold_6680 19140646 105 + 24764193 AUGCUUAUGCGAAUGUGAUGACAACAAAAAGGCAUAAUAGUAAAAUUAAAUGUGUCUAUUAUGCCAG--CAAUACAAUGCACACAUAAAACCACACACACACAGAGG------------ .(((....))).(((((.............((((((((((....((.....))..)))))))))).(--((......))).))))).....................------------ ( -22.30, z-score = -2.00, R) >consensus ______AUACGAAUGCGAUGACAACAAAAAGGCAUAAUAGUAAAAUUAAAUGUGUCUAUUAUGCCAGGCCAAUACAAUGCACACAUAAAACCACACUCAAACCUAGCAAAA________ ..............................((((((((((....((.....))..))))))))))...................................................... (-13.20 = -13.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:01 2011