| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,047,681 – 14,047,776 |
| Length | 95 |
| Max. P | 0.711830 |
| Location | 14,047,681 – 14,047,776 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 75.59 |
| Shannon entropy | 0.39752 |
| G+C content | 0.28618 |
| Mean single sequence MFE | -19.15 |
| Consensus MFE | -12.62 |
| Energy contribution | -13.62 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.711830 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14047681 95 - 24543557 UUUUAUUUGCCAAAAACUAUGCAAUGCUUUUUGGAAAGGGAUUGCUAGUUAAUUAAU------UCUACAAGGCGUUAUUUUUAAACUUGGCAGAAAGGAAU ((((.((((((((.(((((.(((((.((((.....)))).))))))))))...((((------.((....)).)))).........)))))))).)))).. ( -22.40, z-score = -2.09, R) >droEre2.scaffold_4784 14037416 100 - 25762168 CUUUAUUGGCCAAAAACUAUGCAACGCUUUUCAUAAAUGUAUGGCUAGUUAUUUAAAAAUGAGUCCAUAAAUUACUUGUGUUUAUUUUGGUUAUAUGCGU- ......(((((((((...((((((.(((..(((((....)))))..))).........(((....))).......))))))...))))))))).......- ( -15.00, z-score = 0.58, R) >droSec1.super_0 6195635 91 - 21120651 UUUUAUUUGCCAAAAACUAUGCAAUGCUUUUUCGAAAGGGAUUGCUAGUAAAUUAAAAAUGAGUCCAUAAAUUACUUGUGUUUAUUUUGGU---------- ........(((((((((((.(((((.((((.....)))).)))))))))....((((.(..(((.........)))..).)))))))))))---------- ( -19.60, z-score = -2.07, R) >droSim1.chr3L 13401930 91 - 22553184 UUUUAUUUGCCAAAAACUAUGCAAUGCUUUUUCGAAAGGGAUUGCUAGUAAAUUAAAAAUGAGUCCAUAAAUUACUUGUGUUUAUUUUGGU---------- ........(((((((((((.(((((.((((.....)))).)))))))))....((((.(..(((.........)))..).)))))))))))---------- ( -19.60, z-score = -2.07, R) >consensus UUUUAUUUGCCAAAAACUAUGCAAUGCUUUUUCGAAAGGGAUUGCUAGUAAAUUAAAAAUGAGUCCAUAAAUUACUUGUGUUUAUUUUGGU__________ ........(((((((((((.(((((.((((.....)))).)))))))))..................(((((.......)))))))))))).......... (-12.62 = -13.62 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:00 2011