| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,021,223 – 14,021,325 |
| Length | 102 |
| Max. P | 0.515463 |
| Location | 14,021,223 – 14,021,325 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 66.18 |
| Shannon entropy | 0.76308 |
| G+C content | 0.59600 |
| Mean single sequence MFE | -39.98 |
| Consensus MFE | -9.30 |
| Energy contribution | -9.18 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.83 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14021223 102 - 24543557 AAGCUAGGCCGAAUGGCCUCGACACGGGCUUUCGACCCGAGUCCGAAUCAAAUGCGGUUGAUGCGCGGCAUUCGGGUGGCCAUCACCAAUGUAGUGGCAGGG ..((..(((((((.(((((......)))))))).(((((((((((.(((((......)))))...))).))))))))))))..(((.......))))).... ( -40.10, z-score = -1.15, R) >droSec1.super_0 6167604 102 - 21120651 AAGCUAGGCCGAAUGGCCUCGACACGGGCGUUCGACCCGAGUCCGAAUCAGAUGCGGUUGAUGCGCGGCAUUCGGGUGGCCAUCACCAAUGUGGUGGCAGGG ..((..(((((((((.((.......)).))))).(((((((((((.(((((......)))))...))).))))))))))))..((((.....)))))).... ( -45.50, z-score = -1.86, R) >droYak2.chr3L 14108275 102 - 24197627 AAGCUAGGCCGAAUGGCCUCGACACGGGCCUUCGACCCCAGUCCGAAUCAGCUGCGACUGAUGCGCGGCAUUCGGGUGGCCAUCACCAAUGUGGUGGCAGGG ......((.((((.(((((......))))))))).))((..(((((((..((((((.(....))))))))))))))..((((((((....)))))))).)). ( -47.10, z-score = -2.17, R) >droEre2.scaffold_4784 14011769 102 - 25762168 AAGCUAGGCCGAAUGGCCUCGACACGGGCCUUCGACCCGAGUCCGAAUCAGCUGCGACUGAUGCGCGGCAUUCGGGUGGCCAUCACUAAUGUGGUUGCAGGG ..((..(((((((.(((((......)))))))).(((((((((((.(((((......)))))...))).))))))))))))(((((....))))).)).... ( -47.50, z-score = -2.89, R) >droAna3.scaffold_13337 11369601 102 + 23293914 AAGCUGGGCCGGAUGGCCUCGACCCGGGCCUUCGAUCCCAGUCCCAAUCAGUUACGGCUCAUGCGAGGUAUUCGCGCCGCCAUAACAAACGUGGUGGCUGGG ..((((((.((((.(((((......)))))))))..))))))((((................(((((...)))))((((((((.......)))))))))))) ( -43.50, z-score = -1.51, R) >dp4.chrXR_group8 6802217 102 + 9212921 AAACUGGGCCGCAUGGCCUCUACCCGCGCCUUCGAUCCGAGUCCACAUCAGCUGCGUCUGAUGCGCGGCAUCCGAGCGGCCAUCACCAACGUUGUAGCCAGC ......((((((.(((.(((....((......))....))).))).....(((((((.....)))))))......)))))).........((((....)))) ( -32.20, z-score = 0.50, R) >droWil1.scaffold_180698 5175957 96 + 11422946 AAAUUGGGUCGAAUGGCAUCCACACGAGCCUUCGAUCCCAG------UCAGGUGCGUCUAAUGCGGGGCAUACGCGCCGCCGUCACCAAUGUGGUGGCCAGC ..(((((((((((.(((.((.....)))))))))).)))))------)..(((((((...((((...)))))))))))(((..(((....)))..))).... ( -41.60, z-score = -2.39, R) >droVir3.scaffold_13049 2147967 96 + 25233164 AAACUGGGUCGCAUGGCCUCCACGCGUGCCUUCGACCCAAG------CCAGCCGCGUUUCUUGCGCGGCAUACGUGUCGCCAUCACCAAUGUGGUGGCCAGC ....(((((((...((((.......).)))..)))))))..------...(((((((.....))))))).........((((((((....)))))))).... ( -43.00, z-score = -2.67, R) >droMoj3.scaffold_6680 7067741 96 + 24764193 AAGCUGGGUCGCAUGGCCUCGACGCGUGCCUUCGAUCCCAG------CCAGCCGCGUUUCUUGCGCGGCAUACGGGCAGCUAUUACAAACGUGGUGCCCAGC ..(((((((((...(((..((...)).)))..))).)))))------)..(((((((.....)))))))....(((((.((((.......)))))))))... ( -44.70, z-score = -2.48, R) >droGri2.scaffold_15110 6213519 96 + 24565398 AAACUUGGACGCAAGGCAUCGACGCGUGCCUUCGAUCCAAG------CCAGCCGCGUUUAUUGCGCGGCAUACGCGUUGCCAUCACCAAUGUGGUUGCUAGC ...((((((((.(((((((......))))))))).))))))------...(((((((.....)))))))....((...((.(((((....))))).))..)) ( -41.40, z-score = -3.07, R) >anoGam1.chr2R 8857047 96 - 62725911 CGGCUCGGCCGUUUAGCCUCGACCAAGGCGUACUUUCCGCU------CAAGUCGGGCAUAUUUUGUGGCCUUCGGUUUGCCGUGACGCAGGUGGAUCUGCGC ((((..(((((....((((((((...((((.......))))------...)))))(((.....))))))...))))).))))...((((((....)))))). ( -34.20, z-score = -0.17, R) >triCas2.ChLG6 13016837 93 + 13544221 CGUCUGAAGAAGUUAGUUAAUACCAAACCGUACGUUUACAAU-----UUGAAUAAGUUGUUCACGAAUUUGGUGUUUUGCUUAUCGAAAGUUGGAAGC---- ..((..(....(..(((.(((((((((...(.(((..(((((-----((....)))))))..)))).)))))))))..)))...).....)..))...---- ( -19.00, z-score = -0.84, R) >consensus AAGCUGGGCCGAAUGGCCUCGACACGGGCCUUCGAUCCCAGU_____UCAGCUGCGUUUGAUGCGCGGCAUUCGGGUGGCCAUCACCAAUGUGGUGGCAAGC .......(((.....((((......)))).......................((((.....)))).)))......((.(((((.......))))).)).... ( -9.30 = -9.18 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:59 2011