Locus 7331

Sequence ID dm3.chr3L
Location 13,957,714 – 13,957,765
Length 51
Max. P 0.980503
window10092

overview

Window 2

Location 13,957,714 – 13,957,765
Length 51
Sequences 6
Columns 53
Reading direction reverse
Mean pairwise identity 76.39
Shannon entropy 0.44087
G+C content 0.43312
Mean single sequence MFE -14.24
Consensus MFE -12.27
Energy contribution -10.83
Covariance contribution -1.44
Combinations/Pair 1.64
Mean z-score -1.64
Structure conservation index 0.86
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.05
SVM RNA-class probability 0.980503
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 13957714 51 - 24543557
CCAACAUUUGUUGAUUCUUUUGAA--AUUCCGGCCUCUAUGGUUGGGAGAUCA
.((((....)))).......(((.--.((((((((.....))))))))..))) ( -15.70, z-score =  -2.37, R)
>droSim1.chr3L 13313895 51 - 22553184
CCAACAUUUGUUGAUUCUUUUGAA--AUUCCAGCCUCUGUGGUUGGGAGAUCA
.((((....)))).......(((.--.((((((((.....))))))))..))) ( -16.50, z-score =  -2.57, R)
>droSec1.super_0 6104766 51 - 21120651
CCAACAUUUGUUGAUUCUUUUGAA--AUUCCAGCCUCUGUGGUUGGGAGAUCA
.((((....)))).......(((.--.((((((((.....))))))))..))) ( -16.50, z-score =  -2.57, R)
>droYak2.chr3L 14044972 50 - 24197627
CCAACAUUUGUUGAUUCUUUUCAA--AAUCCGGCCCUUG-GGUUGGGAGAUCA
.((((....))))...........--..(((((((....-)))))))...... ( -13.20, z-score =  -0.72, R)
>droEre2.scaffold_4784 13947939 51 - 25762168
CCAACAUUUGUUGAUUCUUUUGAA--AAUCCGGCCCUUGUGGUUGGGAGCUCG
.((((....)))).(((....)))--..(((((((.....)))))))...... ( -11.40, z-score =  -0.51, R)
>droAna3.scaffold_13337 11308491 53 + 23293914
CCGCCACUUGGCGACCCUACGCAGUUUAUUUGGAUUGUCUAUUUGGCAAAUAA
..((((..((((((.((..............)).))).)))..))))...... ( -12.14, z-score =  -1.10, R)
>consensus
CCAACAUUUGUUGAUUCUUUUGAA__AAUCCGGCCUCUGUGGUUGGGAGAUCA
.((((....))))...............(((((((.....)))))))...... (-12.27 = -10.83 +  -1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:52 2011