| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,899,597 – 13,899,678 |
| Length | 81 |
| Max. P | 0.807648 |
| Location | 13,899,597 – 13,899,678 |
|---|---|
| Length | 81 |
| Sequences | 9 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 70.25 |
| Shannon entropy | 0.55947 |
| G+C content | 0.45826 |
| Mean single sequence MFE | -19.22 |
| Consensus MFE | -7.87 |
| Energy contribution | -8.23 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13899597 81 - 24543557 ------------GACGAAAAGCGGAAAAAUCUGAUUAUCAAGCAGCC-GAUGCCAAGAGAACUUGGCCAAGGCUUC-AAACCAAAUCAGCAUCCA ------------..........(((.....((((((.......((((-...((((((....))))))...))))..-......))))))..))). ( -22.26, z-score = -2.81, R) >droVir3.scaffold_13049 13903858 64 - 25233164 -------------------GUUGUUUACCUUUGAUUAU--AUCAGCA--CUGUCAUCUGUCCGUUGCCAGAGCUGC-AAAUCCUUUCG------- -------------------.............((((..--..((((.--(((.((.(.....).)).))).)))).-.))))......------- ( -9.40, z-score = -0.57, R) >droMoj3.scaffold_6680 11341258 66 + 24764193 -------------------GUUCCGUA-CUGCGAUAAU--AUCAGCACGCUGUCAACUGCCCGUUGCCGGAGCUGCGAAACCCUUUCU------- -------------------(((.((((-((.((.....--..(((....))).((((.....)))).)).)).)))).))).......------- ( -12.60, z-score = 0.27, R) >dp4.chrXR_group6 5719220 93 - 13314419 GAGAGUGGGGGAGUGGAAGAAUAGAAAAAUCCGAUUAUCAAGCAGCU-GAUGCCAACAGAACUUGGCCAAGGCUUC-AAACCAAAUCAGCAUCUG .(((((..((...((((............))))....))..)).(((-((((((((......)))))...((....-...))..)))))).))). ( -20.40, z-score = 0.10, R) >droAna3.scaffold_13337 11249644 81 + 23293914 ------------AAAGGAAAGUGGAGAAAUCUGAUUAUCAGGCAGCU-GAUGCCAAGACAACUUGGCCAAGGAUUC-AAACCAAAUCAGCAUCCU ------------..((((...........((((.....))))..(((-(((((((((....))))))...((....-...))..)))))).)))) ( -23.50, z-score = -2.33, R) >droEre2.scaffold_4784 13890446 81 - 25762168 ------------GACGAAAAGUCGAAAAAUCUGAUUAUCAAGCAGCC-GAUGCCAAGAGAACUUGGCCAAGGCUUC-AAACCAAAUCAGCAUCCA ------------(((.....))).......((((((.......((((-...((((((....))))))...))))..-......))))))...... ( -22.36, z-score = -3.38, R) >droYak2.chr3L 13984164 81 - 24197627 ------------GACGAAAAGUGGAAAAAUCAGAUUAUCAAGCAGCC-GAUGCCAAGAGAACUUGGCCAAGGCUUC-AAACCAAAUCAGCAUCUA ------------...((....(((........(.....)..(.((((-...((((((....))))))...)))).)-...)))..))........ ( -17.90, z-score = -1.54, R) >droSec1.super_0 6041873 81 - 21120651 ------------GACGAAAAGCGGAAAAAUCUGAUUAUCAAGCAGCC-GAUGCCAAGAGAACUUGGCCAAGGCUUC-AAACCAAAUCAGCAUCCA ------------..........(((.....((((((.......((((-...((((((....))))))...))))..-......))))))..))). ( -22.26, z-score = -2.81, R) >droSim1.chr3L 13255601 81 - 22553184 ------------GACGAAAAGCGGAAAAAUCUGAUUAUCAAGCAGCC-GAUGCCAAGAGAACUUGGCCAAGGCUUC-AAACCAAAUCAGCAUCCA ------------..........(((.....((((((.......((((-...((((((....))))))...))))..-......))))))..))). ( -22.26, z-score = -2.81, R) >consensus ____________GACGAAAAGUGGAAAAAUCUGAUUAUCAAGCAGCC_GAUGCCAAGAGAACUUGGCCAAGGCUUC_AAACCAAAUCAGCAUCCA ................................((((.......((((....(((((......)))))...)))).........))))........ ( -7.87 = -8.23 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:47 2011