| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,896,025 – 13,896,091 |
| Length | 66 |
| Max. P | 0.992428 |
| Location | 13,896,025 – 13,896,091 |
|---|---|
| Length | 66 |
| Sequences | 7 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 81.47 |
| Shannon entropy | 0.37664 |
| G+C content | 0.46882 |
| Mean single sequence MFE | -13.90 |
| Consensus MFE | -10.10 |
| Energy contribution | -11.19 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.54 |
| SVM RNA-class probability | 0.992428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13896025 66 + 24543557 CACACAUUACACACAACA-ACACGGAAGAGGCAGAAUUGCCCUGUCUCUUUCCUUCUUUCGCUUUAG ..................-....(((((((((((.......)))))))))))............... ( -15.20, z-score = -3.74, R) >droSim1.chr3L 13252050 66 + 22553184 CACACAUUACACACAACA-ACACGGAAGAGGCAGAAUUGCCCUGUCUCUUUCCUUCUUUCGCCUUAG ..................-....(((((((((((.......)))))))))))............... ( -15.20, z-score = -3.64, R) >droSec1.super_0 6038326 66 + 21120651 CACACAUUACACACAACA-ACACGGAAGAGGCAGAAUUGCCCUGUCUCUUUCCUUCUUUCGCCUUAG ..................-....(((((((((((.......)))))))))))............... ( -15.20, z-score = -3.64, R) >droYak2.chr3L 13980646 66 + 24197627 CACACAUUACACACAACA-ACACGGAAGAGGCAGAGUUGCCCUGUCUCUUUCCUUCUUUCGCCUUAG ..................-....(((((((((((.......)))))))))))............... ( -15.20, z-score = -2.74, R) >droEre2.scaffold_4784 13886766 66 + 25762168 CACACAUUACACACAACA-ACACGGAAGAGGCAGAGUUGCCCUGUCUCUUUCCUUCUUUCGCCUUAU ..................-....(((((((((((.......)))))))))))............... ( -15.20, z-score = -2.94, R) >droAna3.scaffold_13337 11246601 66 - 23293914 CGCACAUUACACACAACA-ACAGGGAAGAGCCAGAGUUGUCCUGUCUCUCUCCUUCUUGCGCCUCAG ................((-(.(((((((((.(((.......))).)))).))))).)))........ ( -13.70, z-score = -0.35, R) >droWil1.scaffold_180949 3493923 67 - 6375548 CACACAUCUCACACAAUAUAUUUCAAGGAAGUGCUCCUUGUCGAGUAAGCCCAUUCUUUCGUUUCAA ..................(((((((((((.....))))))..))))).................... ( -7.60, z-score = -0.49, R) >consensus CACACAUUACACACAACA_ACACGGAAGAGGCAGAAUUGCCCUGUCUCUUUCCUUCUUUCGCCUUAG .......................(((((((((((.......)))))))))))............... (-10.10 = -11.19 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:46 2011