| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,886,457 – 13,886,553 |
| Length | 96 |
| Max. P | 0.838155 |
| Location | 13,886,457 – 13,886,553 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 61.47 |
| Shannon entropy | 0.62441 |
| G+C content | 0.35774 |
| Mean single sequence MFE | -13.48 |
| Consensus MFE | -5.24 |
| Energy contribution | -5.67 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.838155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13886457 96 - 24543557 ACACACACACAAACACGCAGCUUAACAACUCAAAUGCAAAUGCAAAUGCAAAAAAAGAAAAACUCACAUAUGC----CCGAGUAUUUGAGUACUCGAAAC ...........................((((((((((...(((....)))......((.....))........----....))))))))))......... ( -14.50, z-score = -1.84, R) >droSec1.super_0 6028835 84 - 21120651 ACACACACACAAACACGCAGCUUAACAACUCAAAUGGAAAUGCAA------------AAAAACUCACACAUGC----CAGAGUAUUUGAGUACUCGAAAC ...............((..((((((..((((...(((..(((...------------...........))).)----))))))..))))))...)).... ( -9.04, z-score = -0.19, R) >droYak2.chr3L 13970482 94 - 24197627 ACACACACACAUACACUCAGCUUUACAACUCAAAUGCAAUAAAAA------AAAAAAAUAAACUCACACAUGCACUAUGCAGUAUUUGAGUACUCGAAAC ...........................((((((((((..(.....------.).................(((.....)))))))))))))......... ( -11.00, z-score = -1.89, R) >droWil1.scaffold_180949 3479617 96 + 6375548 GGACACACGCAAGGAUAUAGAUAUG-AAUGCACAUACAUAUAUCUGCUCGAUUAAACAAUGCAUUUAACACGU---UUUCUAUAUCUGUUUAUGGAAAAC .......((...(((((((..((((-......))))..)))))))...)).....................((---((((((((......)))))))))) ( -19.40, z-score = -2.63, R) >consensus ACACACACACAAACACGCAGCUUAACAACUCAAAUGCAAAUACAA______AAAAA_AAAAACUCACACAUGC____CACAGUAUUUGAGUACUCGAAAC ...........................((((((((((............................................))))))))))......... ( -5.24 = -5.67 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:44 2011