| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,884,540 – 13,884,631 |
| Length | 91 |
| Max. P | 0.570455 |
| Location | 13,884,540 – 13,884,631 |
|---|---|
| Length | 91 |
| Sequences | 10 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 84.19 |
| Shannon entropy | 0.33110 |
| G+C content | 0.70047 |
| Mean single sequence MFE | -46.03 |
| Consensus MFE | -29.97 |
| Energy contribution | -30.29 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13884540 91 + 24543557 ----CAUCGAUCGCCCACUGGCCGCCGUCGAGGUGGGCAGGGUGCCUGCCGUUCCGGCGGCCAUGUGGCUGGCGGGUGAGGAGCUAAGAUAGGCG ----..(((..((((((((((((((((....((..(((.....)))..))....))))))))).)))...))))..)))...(((......))). ( -48.50, z-score = -2.27, R) >droGri2.scaffold_15110 9208403 91 - 24565398 ----GGCAUGCCGCCCACUGGCCGCCGUUGACGUGGGCAGUGUACCAGCCGUACCGGCCGCCAUGUGACUGGAUGGUGAGGAGCUGAGAUAUGCC ----((((((((((.(((((.((((.......)))).)))))..((.(((((.((((.(((...))).)))))))))..)).)).).).)))))) ( -36.10, z-score = -0.37, R) >droVir3.scaffold_13049 13886812 91 + 25233164 ----GGCAUGGCGACCGCUAGCUGCCGUUGAUGUGGGCAGCGUGCCAGCCGUGCCGGCGGCCAUGUGGCUAGAGGGCGAGGAGCUGAGAUACGCU ----((((((((...(((..((((((.........)))))))))...))))))))(((((((....))).....(((.....)))......)))) ( -41.40, z-score = -0.42, R) >droMoj3.scaffold_6680 11322399 91 - 24764193 ----CGAGUGGCGUCCGCUCGCCGCCGUCGAUGUGGGCAGCGUGCCGGCGGUGCCGGCGGCCAUGUGGCUCGAGGGUGAGGAGCUGAGAUACGCU ----..((((..((((((((..((((.(((((((.((((.(((....))).)))).)))(((....))))))).))))..)))).).))).)))) ( -43.50, z-score = -0.08, R) >droWil1.scaffold_180949 3476754 95 - 6375548 CGGCGCCAUGUCGCCCACUGGCCGCCGUUGAUGUGGGCAAUGUGCCCGCCGUACCGGCGGCCAUAUGACUAGAGGGUGAGGAGCUAAGAUACGCU .(((.((...((((((.((((((((((.((..((((((.....))))))..)).))))))))........)).)))))))).))).......... ( -44.80, z-score = -2.24, R) >droSim1.chr3L 13240005 91 + 22553184 ----CAUCGAUCGCCCACUGGCCGCCGUCGAUGUGGGCAGUGUGCCCGCCGUUCCGGCGGCCAUGUGGCUGGCGGGUGAGGAGCUGAGAUAGGCG ----..(((..((((((((((((((((.((..((((((.....))))))))...))))))))).)))...))))..)))...(((......))). ( -47.10, z-score = -1.90, R) >droSec1.super_0 6026860 91 + 21120651 ----CAUCGAUCGCCCACUGGCCGCCGUCGAUGUGGGCAGUGUGCCCGCCGUUCCGGCGGCCAUGUGGCUGGCGGGUGAGGAGCUGAGAUAGGCG ----..(((..((((((((((((((((.((..((((((.....))))))))...))))))))).)))...))))..)))...(((......))). ( -47.10, z-score = -1.90, R) >droYak2.chr3L 13968445 91 + 24197627 ----CAUCGAUCGCCCACUGGCCGCCGUCGAGGUGGGCAGGGUGCCCGCCGUGCCGGCGGCCAUGUGGCUGGCGGGUGAGGAGCUGAGAUAGGCG ----..(((..((((((((((((((((.((.(((((((.....))))))).)).))))))))).)))...))))..)))...(((......))). ( -52.70, z-score = -2.71, R) >droEre2.scaffold_4784 13874879 91 + 25762168 ----CAUCGAUCGCCCACUGGCCGCCGUCGAGGUGGGCAGGGUGCCCGCCGUUCCGGCGGCCAUGUGGCUGGCGGGUGAGGAGCUGAGAUAGGCG ----..(((..((((((((((((((((....(((((((.....)))))))....))))))))).)))...))))..)))...(((......))). ( -51.60, z-score = -2.67, R) >droAna3.scaffold_13337 11236114 91 - 23293914 ----CAUCGACCGCCCGCUGGCGGCCGUCGAAGUGGGCAGGGUUCCCGCCGUACCGGCGGCCAUAUGGCUGGCGGGUGAGGAGCUGAGGUAGGCG ----.......(((((((..((((((((((..((((((.((....))))).))))))))))).....))..)))))))....(((......))). ( -47.50, z-score = -1.52, R) >consensus ____CAUCGAUCGCCCACUGGCCGCCGUCGAUGUGGGCAGGGUGCCCGCCGUUCCGGCGGCCAUGUGGCUGGCGGGUGAGGAGCUGAGAUAGGCG ...........(((((.(((((((((((((..((.(((.....))).)).....))))))).....)))))).)))))....((........)). (-29.97 = -30.29 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:43 2011