| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,855,866 – 13,855,978 |
| Length | 112 |
| Max. P | 0.781041 |
| Location | 13,855,866 – 13,855,978 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 90.55 |
| Shannon entropy | 0.16214 |
| G+C content | 0.45340 |
| Mean single sequence MFE | -26.70 |
| Consensus MFE | -24.12 |
| Energy contribution | -24.32 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13855866 112 - 24543557 AGUCUAUUAUACACCAUUUAAUUUC-AUACCACUGAUAUGGAAACUAGAAACGUGAAGGCAUCGCGUGAACUUCACGUGAUACCUGCCUCGCAGAACACUACGUCUUAUCGGG .........................-......((((((.(....).......((((.(((((((((((.....)))))))....))))))))..............)))))). ( -27.10, z-score = -2.10, R) >droEre2.scaffold_4784 13846245 108 - 25762168 ----UAUCGUACGCCGUAUAAUUUC-ACGCCGCUGAUACAGAAACUAGAAACGUGAAGGCAUCGCGUGAACUUCACGUGAUACCUGCCUCGCCAAGCACUGCGUCUUAUCGGG ----.......((.(((........-))).))((((((.(((...(((....((((.(((((((((((.....)))))))....))))))))......)))..))))))))). ( -28.90, z-score = -0.66, R) >droYak2.chr3L 13938837 109 - 24197627 ----UACUAUACGCCAUAUAAUUUUAAUGCCACUGAUACAGAAACUAGAAACGUGAAGGCAUCGCGUGAACUUCACGUGAUACCUGCCUCGCCGAGCACUACGUCUUAUCGGA ----............................((((((.(((...(((....((((.(((((((((((.....)))))))....))))))))......)))..))))))))). ( -27.10, z-score = -2.13, R) >droSec1.super_0 5999046 108 - 21120651 ----UAUUAUACGCCAUAUAAUUUC-AUGCCACUGAUAUGAAAACUAGAAACGUGAAGGCAUCGCGUGAACUUAACGUGAUACCUGCCUCGCAGAGCACUACGUCUUAUCGGG ----.....................-......((((((.((...........((((.((((((((((.......))))))....))))))))...........)).)))))). ( -23.65, z-score = -0.85, R) >droSim1.chr3L 13212463 108 - 22553184 ----UAUUAUACGCCAUAUAAUUUC-AUGCCACUGAUAUGAAAACUAGAAACGUGAAGGCAUCGCGUGAACUUCACGUGAUACCUGCCUCGCAGAGCACUACGUCUUAUCGGG ----.....................-......((((((.((...........((((.(((((((((((.....)))))))....))))))))...........)).)))))). ( -26.75, z-score = -1.70, R) >consensus ____UAUUAUACGCCAUAUAAUUUC_AUGCCACUGAUAUGGAAACUAGAAACGUGAAGGCAUCGCGUGAACUUCACGUGAUACCUGCCUCGCAGAGCACUACGUCUUAUCGGG ................................((((((.(((...(((....((((.(((((((((((.....)))))))....))))))))......)))..))))))))). (-24.12 = -24.32 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:40 2011