| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,829,576 – 13,829,627 |
| Length | 51 |
| Max. P | 0.545167 |
| Location | 13,829,576 – 13,829,627 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 94.71 |
| Shannon entropy | 0.09766 |
| G+C content | 0.45490 |
| Mean single sequence MFE | -11.35 |
| Consensus MFE | -9.59 |
| Energy contribution | -10.39 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545167 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13829576 51 - 24543557 UGGCACCCCAGAUAAAAAGUACUCUUACAUUUUAUGGCAUUCUCGGUGCCC .(((((((((..(((((.(((....))).)))))))).......)))))). ( -13.11, z-score = -2.11, R) >droSim1.chr3L 13199074 51 - 22553184 UGGCACCCCAGAUAAAAAGUACUCUUACAUUUUAUGGCAUUCUCGGUGCCC .(((((((((..(((((.(((....))).)))))))).......)))))). ( -13.11, z-score = -2.11, R) >droSec1.super_0 5972756 51 - 21120651 UGGCACCCCAGAUAAAAAGUACUCUUACAUUUUAUGGCAUUCUCGGUGCCC .(((((((((..(((((.(((....))).)))))))).......)))))). ( -13.11, z-score = -2.11, R) >droYak2.chr3L 13911913 51 - 24197627 UGGCCCCCCAGAUAAAAAGUACUCCUACAUUUUAUGGCAGUCUCGUCGCCC .(((.......((((((.(((....))).))))))(((......)))))). ( -8.50, z-score = -0.73, R) >droEre2.scaffold_4784 13819333 51 - 25762168 UGGCACCCCAGAUAAAAAGUACUCUUACAUUUUAUGGCAUUCUCAAUGCCC (((....))).((((((.(((....))).))))))(((((.....))))). ( -8.90, z-score = -1.23, R) >consensus UGGCACCCCAGAUAAAAAGUACUCUUACAUUUUAUGGCAUUCUCGGUGCCC .(((((((((..(((((.(((....))).)))))))).......)))))). ( -9.59 = -10.39 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:38 2011