| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,828,275 – 13,828,370 |
| Length | 95 |
| Max. P | 0.709099 |
| Location | 13,828,275 – 13,828,370 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 78.32 |
| Shannon entropy | 0.38768 |
| G+C content | 0.44311 |
| Mean single sequence MFE | -25.57 |
| Consensus MFE | -20.11 |
| Energy contribution | -19.82 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.709099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13828275 95 - 24543557 CAUUUGCCACUGAAAAGCAGUCGCUUAUGCAAGAGGCGAAUUUUUAAUAAUGCCAGC---GCCAAGAACUUGG----AAUGGUGCAAAUGACUGU--AGAGUGG---- ......(((((.....((((((((....))....((((............)))).((---((((.........----..))))))....))))))--..)))))---- ( -26.00, z-score = -1.24, R) >droSim1.chr3L 13196661 95 - 22553184 CAUUUGCCACUGAAAAGCAGUCGCUUAUGCAGGAGGCGAAUUUUUAAUAAUGCCAGC---GCCAAGAAUUUGG----AAUGGUGCAAAUGACUGU--AGAGUGG---- ......(((((.....((((((((....))....((((............)))).((---((((.........----..))))))....))))))--..)))))---- ( -26.00, z-score = -1.10, R) >droSec1.super_0 5971437 95 - 21120651 CAUUUGCCACUGAAAAGCAGUCGCUUAUGCAGGAGGCGAAUUUUUAAUAAUGCCAGC---GCCAAGAAUUUGG----AAUGGUGCAAAUGACUGU--AGAGUGG---- ......(((((.....((((((((....))....((((............)))).((---((((.........----..))))))....))))))--..)))))---- ( -26.00, z-score = -1.10, R) >droYak2.chr3L 13910638 95 - 24197627 CAUUUGCCACUGAAAAGCAGUCGCUUAUGCAGGAGGCGAAUUUUUAAUAAUGCCAGC---GCCAAGAACUUGG----AAUGGUGCAAAUGACUGU--AGAGUGG---- ......(((((.....((((((((....))....((((............)))).((---((((.........----..))))))....))))))--..)))))---- ( -26.00, z-score = -0.97, R) >droEre2.scaffold_4784 13818050 95 - 25762168 CAUUUGCCACUGAAAAGCAGUCGCUUAUGCAGGAGGCGAAUUUUUAAUAAUGCUAGC---GCCAAGAACUUGG----AAUGGCGCAAAUGACUGU--AGAGUGG---- ......(((((.....((((((((((.......))))..................((---((((.........----..))))))....))))))--..)))))---- ( -26.20, z-score = -1.01, R) >droPer1.super_36 806563 96 - 818889 --------CUUUUAAUGC--UUAUUUGCUCAGAA--CGAACUUUUAACAUCAUCGGCGGUGCUCAGGUCUGGGUAUAUAUGGUGAAGGUGCAGGUCAAAGAUGAGUAC --------..........--.....((((((...--...((((...((.((((((...(((((((....)))))))...))))))..))..))))......)))))). ( -23.20, z-score = -0.84, R) >consensus CAUUUGCCACUGAAAAGCAGUCGCUUAUGCAGGAGGCGAAUUUUUAAUAAUGCCAGC___GCCAAGAACUUGG____AAUGGUGCAAAUGACUGU__AGAGUGG____ ......(((((.....((((((((((.......)))).............(((((......((((....))))......))))).....))))))....))))).... (-20.11 = -19.82 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:37 2011