Locus 7318

Sequence ID dm3.chr3L
Location 13,819,193 – 13,819,254
Length 61
Max. P 0.627768
window10073

overview

Window 3

Location 13,819,193 – 13,819,254
Length 61
Sequences 5
Columns 62
Reading direction forward
Mean pairwise identity 95.77
Shannon entropy 0.07388
G+C content 0.51301
Mean single sequence MFE -17.74
Consensus MFE -16.30
Energy contribution -16.38
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -1.40
Structure conservation index 0.92
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.28
SVM RNA-class probability 0.627768
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr3L 13819193 61 + 24543557
GGAGUU-CUCUGCGUGGGCAGGGUAAAGAAUGGGUAAAGGAGAUAAGUUUUUGCGGCCCCGA
......-((((((....))))))........((((...(((((....)))))...))))... ( -15.30, z-score =  -0.02, R)
>droSim1.chr3L 13187777 61 + 22553184
GGAGUU-CUCUGCGUGGGCAGGGUAAAGAAUGGGUAUAGGAGAUAAGUUUUUGCGGCCCAGA
......-((((((....)))))).......(((((...(((((....)))))...))))).. ( -17.20, z-score =  -1.49, R)
>droSec1.super_0 5962576 61 + 21120651
GGAGUU-CUCUGCGUGGGCAGGGUAAAGAAUGGGUAUAGGAGAUAAGUUUUUGCGGCCCAGA
......-((((((....)))))).......(((((...(((((....)))))...))))).. ( -17.20, z-score =  -1.49, R)
>droYak2.chr3L 13901462 62 + 24197627
GGAGUUGCCCUGCGUGGGCAGGGUAAAGAAUGGGUAAAGGAGAUAAGUUUUUGCGGCCCAGA
....(((((((((....)))))))))....(((((...(((((....)))))...))))).. ( -24.40, z-score =  -3.53, R)
>droEre2.scaffold_4784 13807744 61 + 25762168
GGAGUU-CUCUGCGUGGGCACAGUAAAGAAUGGGUAAAGGAGAUAAGUUUUUGCGGCCCAGA
...(((-((.(((.((....))))).)))))((((...(((((....)))))...))))... ( -14.60, z-score =  -0.45, R)
>consensus
GGAGUU_CUCUGCGUGGGCAGGGUAAAGAAUGGGUAAAGGAGAUAAGUUUUUGCGGCCCAGA
.......((((((....)))))).......(((((...(((((....)))))...))))).. (-16.30 = -16.38 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:36 2011