Sequence ID | dm3.chr3L |
---|---|
Location | 13,816,353 – 13,816,408 |
Length | 55 |
Max. P | 0.963339 |
Location | 13,816,353 – 13,816,408 |
---|---|
Length | 55 |
Sequences | 5 |
Columns | 55 |
Reading direction | forward |
Mean pairwise identity | 98.91 |
Shannon entropy | 0.01765 |
G+C content | 0.48364 |
Mean single sequence MFE | -14.76 |
Consensus MFE | -14.10 |
Energy contribution | -14.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.23 |
Structure conservation index | 0.96 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.963339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13816353 55 + 24543557 GACGAGCCGAGUGGUUAGCUUAGACAUUUUGUAAAAGCGGGCGACAGGUGAGAAU ..(..(((..((.((..((((..((.....))..))))..)).)).)))..)... ( -15.20, z-score = -2.44, R) >droSim1.chr3L 13184884 55 + 22553184 GACGAGCCGAGUGGUUAGCUUAGACAUUUUGUAAAAGCGGGCGACAGGUGAGAAU ..(..(((..((.((..((((..((.....))..))))..)).)).)))..)... ( -15.20, z-score = -2.44, R) >droSec1.super_0 5959704 55 + 21120651 GACGAGCCGAGUGGUUAGCUUAGACAUUUUGUAAAAGCGGGCGACAGGUGAGAAU ..(..(((..((.((..((((..((.....))..))))..)).)).)))..)... ( -15.20, z-score = -2.44, R) >droYak2.chr3L 13898550 55 + 24197627 GACGAGCCGAGUGGUUAGCUUAGACAUUUUGUAAAAGCGGGCGACAGGUGAAAAU .....(((..((.((..((((..((.....))..))))..)).)).)))...... ( -14.10, z-score = -1.92, R) >droEre2.scaffold_4784 13804965 55 + 25762168 GACGAGCCGAGUGGUUAGCUUAGACAUUUUGUAAAAGCGGGCGACAGGUGAAAAU .....(((..((.((..((((..((.....))..))))..)).)).)))...... ( -14.10, z-score = -1.92, R) >consensus GACGAGCCGAGUGGUUAGCUUAGACAUUUUGUAAAAGCGGGCGACAGGUGAGAAU .....(((..((.((..((((..((.....))..))))..)).)).)))...... (-14.10 = -14.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:33 2011