Locus 7316

Sequence ID dm3.chr3L
Location 13,816,353 – 13,816,408
Length 55
Max. P 0.963339
window10069

overview

Window 9

Location 13,816,353 – 13,816,408
Length 55
Sequences 5
Columns 55
Reading direction forward
Mean pairwise identity 98.91
Shannon entropy 0.01765
G+C content 0.48364
Mean single sequence MFE -14.76
Consensus MFE -14.10
Energy contribution -14.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.23
Structure conservation index 0.96
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.72
SVM RNA-class probability 0.963339
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 13816353 55 + 24543557
GACGAGCCGAGUGGUUAGCUUAGACAUUUUGUAAAAGCGGGCGACAGGUGAGAAU
..(..(((..((.((..((((..((.....))..))))..)).)).)))..)... ( -15.20, z-score =  -2.44, R)
>droSim1.chr3L 13184884 55 + 22553184
GACGAGCCGAGUGGUUAGCUUAGACAUUUUGUAAAAGCGGGCGACAGGUGAGAAU
..(..(((..((.((..((((..((.....))..))))..)).)).)))..)... ( -15.20, z-score =  -2.44, R)
>droSec1.super_0 5959704 55 + 21120651
GACGAGCCGAGUGGUUAGCUUAGACAUUUUGUAAAAGCGGGCGACAGGUGAGAAU
..(..(((..((.((..((((..((.....))..))))..)).)).)))..)... ( -15.20, z-score =  -2.44, R)
>droYak2.chr3L 13898550 55 + 24197627
GACGAGCCGAGUGGUUAGCUUAGACAUUUUGUAAAAGCGGGCGACAGGUGAAAAU
.....(((..((.((..((((..((.....))..))))..)).)).)))...... ( -14.10, z-score =  -1.92, R)
>droEre2.scaffold_4784 13804965 55 + 25762168
GACGAGCCGAGUGGUUAGCUUAGACAUUUUGUAAAAGCGGGCGACAGGUGAAAAU
.....(((..((.((..((((..((.....))..))))..)).)).)))...... ( -14.10, z-score =  -1.92, R)
>consensus
GACGAGCCGAGUGGUUAGCUUAGACAUUUUGUAAAAGCGGGCGACAGGUGAGAAU
.....(((..((.((..((((..((.....))..))))..)).)).)))...... (-14.10 = -14.10 +  -0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:33 2011