| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,816,211 – 13,816,263 |
| Length | 52 |
| Max. P | 0.739274 |
| Location | 13,816,211 – 13,816,263 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 89.79 |
| Shannon entropy | 0.17526 |
| G+C content | 0.31018 |
| Mean single sequence MFE | -11.64 |
| Consensus MFE | -7.90 |
| Energy contribution | -8.38 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13816211 52 - 24543557 GGCUAUUUAUACAAAUUAAGGCUGAGAAAUUGUCUGACUAUAAGUGGCCAUU (((((((((((.......((((.((....))))))...)))))))))))... ( -15.80, z-score = -3.60, R) >droSim1.chr3L 13184743 51 - 22553184 GGCUAUUUAUACAAAUUAAGGCUGAGAAAUUGUCUGACUAUAAAUGGUCAU- (((((((((((.......((((.((....))))))...)))))))))))..- ( -13.10, z-score = -3.48, R) >droSec1.super_0 5959563 51 - 21120651 GGCUAUUUAUACAAAUUAAGGCUGAGAAAUUGUCUGACUAUAAGUGGUCAU- (((((((((((.......((((.((....))))))...)))))))))))..- ( -13.10, z-score = -2.91, R) >droYak2.chr3L 13898408 52 - 24197627 GGUUAUUUAUACAAAUUAGUGGUAAGAAAUUGUCUGACUAUAAGUGGCAAUU .((((((((((....((((...(((....))).)))).)))))))))).... ( -8.70, z-score = -1.29, R) >droEre2.scaffold_4784 13804825 52 - 25762168 GGUUAUUUAUUCAAAUUAAUGCUUAGAAAUUGUCUGACUAUAAGUGGCAAUU .((((((((((((...((((........))))..)))..))))))))).... ( -7.50, z-score = -0.78, R) >consensus GGCUAUUUAUACAAAUUAAGGCUGAGAAAUUGUCUGACUAUAAGUGGCCAUU (((((((((((.......((((.((....))))))...)))))))))))... ( -7.90 = -8.38 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:32 2011