| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,815,966 – 13,816,062 |
| Length | 96 |
| Max. P | 0.743877 |
| Location | 13,815,966 – 13,816,062 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 79.79 |
| Shannon entropy | 0.39094 |
| G+C content | 0.37928 |
| Mean single sequence MFE | -19.47 |
| Consensus MFE | -11.95 |
| Energy contribution | -13.50 |
| Covariance contribution | 1.55 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.743877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13815966 96 - 24543557 AGCUAGUUUAUUUUCAGAAAUUACUCAAGGGC-ACUCAACUUGAGUAAUUUAGAAAAAUGUCACACGAAAACCUUGUUUACCCAUCGCCUCGUGAUG ..........(((((..((((((((((((...-......)))))))))))).)))))......(((((......((......)).....)))))... ( -20.80, z-score = -2.10, R) >droEre2.scaffold_4784 13804584 96 - 25762168 AGCUAGUUUAUUUUCAGAAAUUGCUCAAGGGC-ACUCAACUUGAGUAAUUUAUAAAAAUGUCACACGAAAACCUUGUUUACCCAUCGCCUCGUGAUG .....((.((((((...((((((((((((...-......))))))))))))...))))))..))..................((((((...)))))) ( -20.40, z-score = -2.00, R) >droYak2.chr3L 13898157 96 - 24197627 GGCUAGUUUAUUUUCAGAAAUUGCUCAAGGGC-ACUCAACUUGAGUAAUUUAUAAAAAUGUCACACGAAAACCUUGUUUACCCAUCGCCUCGUGAUG (((...(((((......((((((((((((...-......)))))))))))))))))...))).(((((......((......)).....)))))... ( -21.10, z-score = -1.94, R) >droSec1.super_0 5959326 96 - 21120651 AGCUAGUUUAUUUUCAGAAAUUGCUCAAGGGC-ACUCAACUUGAGUAAUUUAUAAAAAUGUCACACGAAAACCUUGUUUACCCAUCGUCUCGUGAUG ........((((((...((((((((((((...-......))))))))))))...))))))...(((((..((..((......))..)).)))))... ( -21.40, z-score = -2.36, R) >droSim1.chr3L 13184512 96 - 22553184 GGCUAGUUUAUUUUCAGAAAUUGCUCAAGGGC-ACUCAACUUGAGUAAUUUAUAAAAAUGUCACACGAAAACCUUGUUUACCCAUCGCCUCGUGAUG (((...(((((......((((((((((((...-......)))))))))))))))))...))).(((((......((......)).....)))))... ( -21.10, z-score = -1.94, R) >droPer1.super_57 322127 82 - 429542 AACUACUUUGCUUCGGAAAAUGGAUUGACGUCUGAUCAUCUUUGCGAAAUCGUUAAAA-GAAACAUUAGCAUCCUUCACAGCC-------------- .........(((...(((...((((....(.(((((..((((((((....)))..)))-))...)))))))))))))..))).-------------- ( -12.00, z-score = 0.38, R) >consensus AGCUAGUUUAUUUUCAGAAAUUGCUCAAGGGC_ACUCAACUUGAGUAAUUUAUAAAAAUGUCACACGAAAACCUUGUUUACCCAUCGCCUCGUGAUG ........((((((...((((((((((((..........))))))))))))...))))))......................((((((...)))))) (-11.95 = -13.50 + 1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:31 2011