| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,769,944 – 13,770,042 |
| Length | 98 |
| Max. P | 0.980865 |
| Location | 13,769,944 – 13,770,042 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 69.30 |
| Shannon entropy | 0.58553 |
| G+C content | 0.61034 |
| Mean single sequence MFE | -31.95 |
| Consensus MFE | -14.48 |
| Energy contribution | -15.65 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.06 |
| SVM RNA-class probability | 0.980865 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13769944 98 - 24543557 ACCCAGCAGC-------CCUUCAUCUCCUGCCAUCGCAGGACUCCCAGGGCUGCACC--AGCUCCAGACCCGGCGGACGCAUAAUUCCGGUUGCUCACCCGCGUUUA .....(((((-------(((.....((((((....)))))).....))))))))...--......((((.(((..((.(((..........)))))..))).)))). ( -37.50, z-score = -3.46, R) >droSim1.chr3L 13156650 98 - 22553184 ACCCAGCAGC-------CCUUCAUCUCCUGCCAUCGCAGGACUCCCAGGGCUGCACC--AGCUCCAGACCCGGCGGACGCAUAAUUCCGGUUGCUCACCCGCGUUUA .....(((((-------(((.....((((((....)))))).....))))))))...--......((((.(((..((.(((..........)))))..))).)))). ( -37.50, z-score = -3.46, R) >droSec1.super_0 5931504 98 - 21120651 ACCCACCAGC-------CCUUCAUCUCCUGCCAUCGCAGGACUCCCAGGGCUGCACC--AGCUCCAGACCCGGCGGACGCAUAAUUCCGGUUGCUCACCCGCGUUUA ......((((-------(((.....((((((....)))))).....)))))))....--......((((.(((..((.(((..........)))))..))).)))). ( -32.90, z-score = -2.44, R) >droYak2.chr3L 13868059 107 - 24197627 ACCCAGCAGCUCCUCCUCCUUCAUCUCCUGCCGUCGCAGGACUCCCAGAGCUGCACCAGAGCUCCAGACCCGGCGGACGCAUAAUUCCGGUUGCUCACCCGCGUUUA .....(((((((.............((((((....))))))......)))))))....((((.((.((....((....)).....)).))..))))........... ( -30.31, z-score = -0.88, R) >droEre2.scaffold_4784 13776437 104 - 25762168 ACCCUGCAGC-CCCACAUCGCAGGACCCUGCCAUCGCAGGACUCCCAGGGCUGCACC--AGCUUCAGACCCGGCGGACGCAUAAUUCCGGUUGCUCACCCGCGUUUA ....((((((-((......((((....)))).......((....)).))))))))..--......((((.(((..((.(((..........)))))..))).)))). ( -34.50, z-score = -0.97, R) >droWil1.scaffold_180698 11056444 79 + 11422946 ----------------------------UGCGCUUCUCCCACCUUCGAAGCAUAAUUCAUGUCGUUCCCUCUAUAAGAGUCUGUGUGUGUGUGUGGGCUCGCGUUUA ----------------------------.((((....(((((...((..(((((((((.(((.(......).))).)))).)))))...)).)))))...))))... ( -19.00, z-score = -1.52, R) >consensus ACCCAGCAGC_______CCUUCAUCUCCUGCCAUCGCAGGACUCCCAGGGCUGCACC__AGCUCCAGACCCGGCGGACGCAUAAUUCCGGUUGCUCACCCGCGUUUA .........................((((((....))))))......(((((.......))))).((((.(((..((.(((..........)))))..))).)))). (-14.48 = -15.65 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:24 2011