| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,754,461 – 13,754,560 |
| Length | 99 |
| Max. P | 0.980798 |
| Location | 13,754,461 – 13,754,560 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.16 |
| Shannon entropy | 0.26591 |
| G+C content | 0.29055 |
| Mean single sequence MFE | -21.77 |
| Consensus MFE | -12.66 |
| Energy contribution | -13.08 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.22 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.06 |
| SVM RNA-class probability | 0.980798 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 13754461 99 - 24543557 ------------------UCUCAUAGUAAUUCUAUGCUCGGCUGGCUUUUAGACAACUUUUCUUGAGCUGAGCA-AAAAUUUUAAUAAAGUUAACAACUUUAUUGAAAUCAUAAAAAG-- ------------------................(((((((((.(.....((....)).....).)))))))))-...(((((((((((((.....))))))))))))).........-- ( -23.60, z-score = -3.33, R) >droSim1.chr3L 13139797 99 - 22553184 ------------------UCUCAUAGUAAUUCUAUGCUCGGCUGGCUUUUAGACAACUUUUCUUGAGCUGAGCA-AAAAUUUUAAUAAAGUUAACAACUUUAUUGAAAUCAUAAAAAG-- ------------------................(((((((((.(.....((....)).....).)))))))))-...(((((((((((((.....))))))))))))).........-- ( -23.60, z-score = -3.33, R) >droSec1.super_0 5916149 99 - 21120651 ------------------UCUCAUAGUAAUUCUAUGCUCGGCUGGCUUUUAGACAACUUUUCUUGAGCUGAGCA-AAAAUUUUAAUAAAGUUAACAACUUUAUUGAAAUCAUAAAAAG-- ------------------................(((((((((.(.....((....)).....).)))))))))-...(((((((((((((.....))))))))))))).........-- ( -23.60, z-score = -3.33, R) >droYak2.chr3L 13852185 99 - 24197627 ------------------UUUCAUAGUAAUUCUAUGCUCGGCUGGCUUUUAGACAACUUUUCUUGAGCUGAGCA-AAAAUUUUAAUAAAGUUAACAACUUUAUUGAAAUCAUAAAAAG-- ------------------................(((((((((.(.....((....)).....).)))))))))-...(((((((((((((.....))))))))))))).........-- ( -23.60, z-score = -3.28, R) >droEre2.scaffold_4784 13760814 99 - 25762168 ------------------UCUCAUAGUAAUUCUAUGCUCGGCUGGCUUUUAGACAACUUUUCUUGAGCUGAGCA-AAAAUUUUAAUAAAGUUAACAACUUUAUUGAAAUCAUAAAAAG-- ------------------................(((((((((.(.....((....)).....).)))))))))-...(((((((((((((.....))))))))))))).........-- ( -23.60, z-score = -3.33, R) >droAna3.scaffold_13337 1633020 99 + 23293914 ------------------UCUCUCAGUAAUUCUAUGGUCGGCUGGCUUUUAGACAACUUUUCUCAUGCUGAGCA-AAAAUUUUAAUAAAGUUAAAAAGUUUAUUGAAAUCAUAAAAAA-- ------------------...(((((((..((((.((((....))))..))))............)))))))..-...(((((((((((.(.....).))))))))))).........-- ( -15.44, z-score = -0.68, R) >dp4.chrXR_group8 2548904 99 + 9212921 ------------------UCUCAUAGUAAUUCUCUGCUCGGCUGGCUUUUGCACAACUUUUCU--UGCUGAGCA-AAAAUUUUAAUAAAGUUAACAACUUUAUUGAAAUCGUAAAAAAAG ------------------................((((((((((((....)).))........--.))))))))-...(((((((((((((.....)))))))))))))........... ( -22.60, z-score = -3.43, R) >droPer1.super_36 644497 99 - 818889 ------------------UCUCAUAGUAAUUCUCUGCUCGGCUGGCUUUUGCACAACUUUUCU--UGCUGAGCA-AAAAUUUUAAUAAAGUUAACAACUUUAUUGAAAUCGUAAAAAAAG ------------------................((((((((((((....)).))........--.))))))))-...(((((((((((((.....)))))))))))))........... ( -22.60, z-score = -3.43, R) >droWil1.scaffold_180698 11025066 111 + 11422946 UCUCUAUCUCUCUGUUUAACUUAUAGUAAUUCUAUGCUCGACUGGCUUUUACACAACUUUUU------CUCGCA-AAAAUUUUAAUAAAGUUAACAACUUUAUUGAAAUCAUAAAAAA-- ............(((.(((...((((.....))))(((.....)))..))).))).......------......-...(((((((((((((.....))))))))))))).........-- ( -11.90, z-score = -1.72, R) >droVir3.scaffold_13049 5607597 94 + 25233164 --------------------UCAUAGUAAUUCUAUGCUCGACUGGCUCUUGC-UAACUUUUU---AGCUGAGCACAAAAUUUUAAUAAAGUUAACAACUUUAUUGAAAUUAUAAAAAU-- --------------------.(((((.....)))))......((((((..((-(((....))---))).)))).)).((((((((((((((.....))))))))))))))........-- ( -24.70, z-score = -4.86, R) >droMoj3.scaffold_6680 17431518 94 + 24764193 --------------------UCAUAGUAAUUCUAUGCUCGACUGGCUCUUGC-CAACUUUUU---AGCUGAGCACAAAAUUUUAAUAAAGUUAACAACUUUAUUGAAAUUAUUAAAAA-- --------------------..((((.....))))(((((..((((....))-)).((....---)).)))))....((((((((((((((.....))))))))))))))........-- ( -22.20, z-score = -3.84, R) >droGri2.scaffold_15110 17729375 94 - 24565398 --------------------UCAUAGUAAUUCUAUGCUCGACUGGC-UCUAGCCAACUUUUC---AGCUGAGCACAAAAUUUUAAUAAAGUUAACAACUUUAUUGAAAUCAUAGAAAG-- --------------------.........(((((((......((((-((.(((.........---.))))))).))..(((((((((((((.....))))))))))))))))))))..-- ( -23.80, z-score = -4.09, R) >consensus __________________UCUCAUAGUAAUUCUAUGCUCGGCUGGCUUUUAGACAACUUUUCU__AGCUGAGCA_AAAAUUUUAAUAAAGUUAACAACUUUAUUGAAAUCAUAAAAAG__ ..................................(((((....(((....................))))))))....(((((((((((((.....)))))))))))))........... (-12.66 = -13.08 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:22 2011