| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,751,532 – 13,751,624 |
| Length | 92 |
| Max. P | 0.516234 |
| Location | 13,751,532 – 13,751,624 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 85.12 |
| Shannon entropy | 0.28686 |
| G+C content | 0.29667 |
| Mean single sequence MFE | -15.19 |
| Consensus MFE | -8.35 |
| Energy contribution | -8.78 |
| Covariance contribution | 0.43 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516234 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 13751532 92 + 24543557 AAAACAUUUCACUUGGCUUUUGUUAUUAAAAAAUUCCUAAAAUUACCAAAGAUAAAUAUUAAUAACAAGCCGC---AGCUAACAGUUGCUCCUUC------------------- ..............((((..(((((((((.....((..............))......)))))))))))))((---(((.....)))))......------------------- ( -16.34, z-score = -2.76, R) >droSim1.chr3L 13136895 92 + 22553184 AAAACAUUUCACUUGGCUUUUGUUAUUAAAAAAUUCCUAAAAUUACCAAAGAUAAAUAUUAAUAACAAGCCGC---AGCUAACAGUUGCUCCUUC------------------- ..............((((..(((((((((.....((..............))......)))))))))))))((---(((.....)))))......------------------- ( -16.34, z-score = -2.76, R) >droSec1.super_0 5913261 92 + 21120651 AAAACAUUUCACUUGGCUUUUGUUAUUAAAAAAUUCCUAAAAUUACCAAAGAUAAAUAUUAAUAACAAGCCGC---AGCUAACAGUUGCUCCUUC------------------- ..............((((..(((((((((.....((..............))......)))))))))))))((---(((.....)))))......------------------- ( -16.34, z-score = -2.76, R) >droYak2.chr3L 13849171 92 + 24197627 AAAACAUUUCACUUGGCUUUUGUUAUUAAAAAAUUCCUAAAAUUACCAAAGAUAAAUAUUAAUAACAAGCCGC---AGCUAACAGUUGCUCCUUC------------------- ..............((((..(((((((((.....((..............))......)))))))))))))((---(((.....)))))......------------------- ( -16.34, z-score = -2.76, R) >droEre2.scaffold_4784 13757817 92 + 25762168 AAAACAUUUCACUUGGCUUUUGUUAUUAAAAAAUUCCUAAAAUUACCAAAGAUAAAUAUUAAUAACAAGCCGC---AGCUAACAGUUGCUCCUUC------------------- ..............((((..(((((((((.....((..............))......)))))))))))))((---(((.....)))))......------------------- ( -16.34, z-score = -2.76, R) >droAna3.scaffold_13337 1631459 87 - 23293914 -----AUUUCACUUGGCUUUUGUUAUUAAAAAAUACCUAAAAUUACCAAAGAUAAAUAUUAAUAACAAGCCGC---AGCUAACAGUUGCUACUUC------------------- -----.........((((..(((((((((.............................)))))))))))))((---(((.....)))))......------------------- ( -16.25, z-score = -2.51, R) >dp4.chrXR_group8 2545811 92 - 9212921 AGAACACUUCGCUUGGCUUUUGUUAUUAAAAAAUACCUAAAAUUACCAAAGAUAAAUAUUAAUAACAAGCCGC---AGCUAACAGUUGCUUCCUC------------------- ..............((((..(((((((((.............................)))))))))))))((---(((.....)))))......------------------- ( -16.25, z-score = -2.08, R) >droPer1.super_36 641376 92 + 818889 AGAACACUUCGCUUGGCUUUUGUUAUUAAAAAAUACCUAAAAUUACCAAAGAUAAAUAUUAAUAACAAGCCGC---AGCUAACAGUUGCUUCCUC------------------- ..............((((..(((((((((.............................)))))))))))))((---(((.....)))))......------------------- ( -16.25, z-score = -2.08, R) >droWil1.scaffold_180698 11020090 114 - 11422946 AAAACAUUUCGCUUGGCUUUUGUUAUUAAAAAAUACCUAAAAUUACCAAAGAUAAAUAUUAAUAACCAGCCGCCGCAGCUAACAGUUACUCCUUGUUCUUGUUGUGUUCAUCCU ..............((((...((((((((.............................)))))))).))))..((((((.(((((.......)))))...))))))........ ( -15.85, z-score = -0.73, R) >droVir3.scaffold_13049 5604008 80 - 25233164 AAAACAUUUCACUUGGAUUUCGUUAUUAAAAAAUACCUAAAAUAACCAAAGAUAAAUAUUAAUAACA---------AGCCG-CAGUGUUU------------------------ .........(((((((.(((.((((((((.............................)))))))))---------)))))-.))))...------------------------ ( -9.05, z-score = -1.26, R) >droMoj3.scaffold_6680 17428295 86 - 24764193 AAAACAUUUUACUUGGCUUUUGUUAUUAAAAAAUACCUAAAAUAACCAAAGAUAAAUAUUAAUAACAGGCCAG---AGCCG-CAAUGUUU------------------------ .(((((((...(((((((..(((((((((.............................)))))))))))))).---))...-.)))))))------------------------ ( -14.15, z-score = -1.71, R) >droGri2.scaffold_15110 17726060 86 + 24565398 AAAACAUUUCACUUGGCUCUUGUUAUUAAAAAAUACCUAAAAUUACCAAAGAUAAAUAUUAAUAACAAGCCGC---AGCCG-CAAUGCUU------------------------ ..............(((((((((((((((.............................)))))))))))....---)))).-........------------------------ ( -12.75, z-score = -1.63, R) >consensus AAAACAUUUCACUUGGCUUUUGUUAUUAAAAAAUACCUAAAAUUACCAAAGAUAAAUAUUAAUAACAAGCCGC___AGCUAACAGUUGCUCCUUC___________________ ..............((((..(((((((((.............................)))))))))))))........................................... ( -8.35 = -8.78 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:21 2011