| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,741,938 – 13,742,049 |
| Length | 111 |
| Max. P | 0.643010 |
| Location | 13,741,938 – 13,742,049 |
|---|---|
| Length | 111 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.47 |
| Shannon entropy | 0.25255 |
| G+C content | 0.44353 |
| Mean single sequence MFE | -32.83 |
| Consensus MFE | -25.77 |
| Energy contribution | -25.57 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13741938 111 - 24543557 -------AGGAUAUUUGUUGCAAAAAACCAAUUUUAUGCUUGCAAAGGCAUGAAAAGCCUUUGUUCGUGUCUAUUUUACGUUAG-UUUGGCGUCUGCGGCGGCGACUCGCAUCCUCUGC- -------(((((...(((((((.........((((((((((....)))))))))).(((......((((.......))))....-...)))...)))))))(((...))))))))....- ( -31.12, z-score = -1.06, R) >droSim1.chr3L 13127405 111 - 22553184 -------AGGAUAUUUGUUGCAAAAAACCAAUUUUAUGCUUGCAAAGGCAUGAAAAGCCUUUGUUCGUGUCUAUUUCACGUUAG-UUUGGCGUCUGCGGCGGCGACUCGCAUCCUCUGC- -------(((((...(((((((.........((((((((((....)))))))))).(((......((((.......))))....-...)))...)))))))(((...))))))))....- ( -32.62, z-score = -1.44, R) >droSec1.super_0 5903709 111 - 21120651 -------GGGAUAUUUGUUGCAAAAAACCAAUUUUAUGCUUGCAAAGGCAUGAAAAGCCUUUGUUCGUGUCUAUUUCACGUUAG-UUUGGCGUCUGCGGCGGCGACUCGCAUCCUCUGC- -------(((((...(((((((.........((((((((((....)))))))))).(((......((((.......))))....-...)))...)))))))(((...))))))))....- ( -32.62, z-score = -1.31, R) >droYak2.chr3L 13839613 111 - 24197627 -------AGGAUAUUUGUUGCAAAAAACCAAUUUUAUGCUUGCAAAGGCAUGAAAAGCCUUUGUUCGUGUCUAUUUCACGUUAG-UUUGGCGUCUGCGGCGGCGACUCGCAUCCUCUGC- -------(((((...(((((((.........((((((((((....)))))))))).(((......((((.......))))....-...)))...)))))))(((...))))))))....- ( -32.62, z-score = -1.44, R) >droEre2.scaffold_4784 13748429 111 - 25762168 -------AGGAUAUUUGUUGCAAAAAACCAAUUUUAUGCUUGCAAAGGCAUGAAAAGCCUUUGUUCGUGUCUAUUUCACGUUAG-UUUGGCGUCUGCGGCGGCGACUCGCAUCCUCUGC- -------(((((...(((((((.........((((((((((....)))))))))).(((......((((.......))))....-...)))...)))))))(((...))))))))....- ( -32.62, z-score = -1.44, R) >droAna3.scaffold_13337 1619531 112 + 23293914 -------AGGAUAUUUGUUGCAAAAAAGCAAUUUUAUGCUUGCAAAGGCAUGAAAAGCCUUUGUUCGUGUCUAUUUCACGUUAG-UUUGGCGUCUACGGCGGCGACUCUCCUCCCUUCUU -------((((.(.(((((((......((..((((((((((....)))))))))).(((......((((.......))))....-...))))).....))))))).).))))........ ( -30.52, z-score = -1.60, R) >dp4.chrXR_group8 2534342 118 + 9212921 UUGAAGCAGGAUAUUUGUUGCAAAAAAGCAAUUUUAUGCUUGCAAAGGCAUGAAAAGCCUUUGUUCGUGUCUAUUUCACGUUAG-UUUGGCGUCUGCGGCGGCGACUCGCCAGACCCAC- .((((((((((((...(((((......)))))..))).)))))..(((((((((.........)))))))))..)))).....(-(((((((..(((....)))...))))))))....- ( -37.70, z-score = -1.72, R) >droPer1.super_36 629987 118 - 818889 UUGAAGCAGGAUAUUUGUUGCAAAAAAGCAAUUUUAUGCUUGCAAAGGCAUGAAAAGCCUUUGUUCGUGUCUAUUUCACGUUAG-UUUGGCGUCUGCGGCGGCGACUCGCCAGACCCAC- .((((((((((((...(((((......)))))..))).)))))..(((((((((.........)))))))))..)))).....(-(((((((..(((....)))...))))))))....- ( -37.70, z-score = -1.72, R) >droWil1.scaffold_180698 11004478 103 + 11422946 UGGGCUCAGGAUAUUUGUUGCAAAAAAGCAAUUUUAUGCUUGCAAAGGCAUGAAAAGCCUUUGUUCGUGUCUAUUUCACGUUAGUUUUGGCGUCUGCGGUGGC----------------- .(((((((((((.......(((.((((....)))).)))..((((((((.......)))))))).((((.......))))...))))))).))))........----------------- ( -26.00, z-score = -0.07, R) >droGri2.scaffold_15110 17712670 111 - 24565398 -------AUGAUAUUUGUUGCAAAAAAGCAAUUUUAUGCUUGCAAAGGCAUGAAAAGCCUUUGUUCGUGUCUAUUUCACGUUAG-UUUGGCGUCUGCGGCGGCAACGCCUCUCUCUCUC- -------......(((((.(((.((((....)))).)))..))))).(((.((...(((......((((.......))))....-...))).)))))((((....))))..........- ( -32.22, z-score = -2.21, R) >droVir3.scaffold_13049 5590041 105 + 25233164 -------AGGAUAUUUGUUGCAAAAAAGCAAUUUUAUGCUUGCAAAGGCAUGAAAAGCCUUUGUUCGUGUCUAUUUCACGUUAG-UUUGGCGUCUGCGGCAGCGACGCCUCUA------- -------((.(((...(((((......)))))..))).)).((((((((.......)))))))).((((.......)))).(((-...((((((.((....)))))))).)))------- ( -34.40, z-score = -2.31, R) >droMoj3.scaffold_6680 17415267 105 + 24764193 -------AGGAUAUUUGUUGCAAAAAAGCAAUUUUAUGCUUGCAAAGGCAUGAAAAGCCUUUGUUCGUGUCUAUUUCACGUUAG-UUUGGCGUCUGCGGCAGCGACGCCUCUC------- -------((.(((...(((((......)))))..))).)).((((((((.......)))))))).((((.......))))....-...((((((.((....))))))))....------- ( -33.80, z-score = -2.27, R) >consensus _______AGGAUAUUUGUUGCAAAAAAGCAAUUUUAUGCUUGCAAAGGCAUGAAAAGCCUUUGUUCGUGUCUAUUUCACGUUAG_UUUGGCGUCUGCGGCGGCGACUCGCCUCCUCUGC_ ..............(((((((..........((((((((((....)))))))))).(((......((((.......))))........))).......)))))))............... (-25.77 = -25.57 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:18 2011