| Sequence ID | dm3.chr2L |
|---|---|
| Location | 569,725 – 569,830 |
| Length | 105 |
| Max. P | 0.702317 |
| Location | 569,725 – 569,830 |
|---|---|
| Length | 105 |
| Sequences | 14 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 72.26 |
| Shannon entropy | 0.64343 |
| G+C content | 0.60284 |
| Mean single sequence MFE | -33.66 |
| Consensus MFE | -15.00 |
| Energy contribution | -15.85 |
| Covariance contribution | 0.85 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.702317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 569725 105 + 23011544 CCAAAUAUGACUCCCAGUAUGACGCCACAUGU-GACUCCGGGACAUGCUACUCCCAUGCUGACGCCCGGAGGCAGUACUCCUAUCGGAGUCAAGGCAAUGGCCAUG .......(((((((((((((..(((.....))-).....((((........))))))))))......((((......))))....))))))).(((....)))... ( -34.70, z-score = -1.51, R) >droSim1.chr2L_random 28408 105 + 909653 CCAAAUAUGACUCCCAGUAUGACGCCACAUGU-GACUCCGGGACAUGCUACUCCCAUGCUGACGCCCGGAGGCAGUACUCCUAUCGGAGUCAAGGCAAUGGCCAUG .......(((((((((((((..(((.....))-).....((((........))))))))))......((((......))))....))))))).(((....)))... ( -34.70, z-score = -1.51, R) >droSec1.super_14 552418 105 + 2068291 CCAAAUAUGACUCCCAGUAUGACGCCACAUGU-GACUCCGGGACAUGCUACUCCCAUGCUGACGCCCGGAGGCAGUACUCCUAUCGGAGUCAAAGCAAUGGCCAUG .......................((((....(-(((((((((....((.........)).....)))((((......))))....)))))))......)))).... ( -30.80, z-score = -0.96, R) >droYak2.chr2L 558113 105 + 22324452 CCAAACAUGACCCCCAGUAUGACGCCACAUGC-GACUCCGGGACAUGCUACACCUAUGCUGACGCCCGGAGGCAGUACUCCUAUCGGAGUCAAGGCAAUGGCCAUG .....((((.((.((.(((((......)))))-(((((((((....((.........)).....)))((((......))))....))))))..))....)).)))) ( -34.90, z-score = -1.83, R) >droEre2.scaffold_4929 625221 105 + 26641161 CCAAAUAUGACUCCCAGUAUGACGCCACAUGC-GACUCCGGGACAUGCUACUCCUAUGCUGACGCCCGGAGGCAGUACUCCUAUCGGAGUCAAAGCAAUGGCCAUG (((....(((((((..(((((......)))))-..(((((((....((.........)).....)))))))..............)))))))......)))..... ( -32.70, z-score = -1.69, R) >droAna3.scaffold_12916 1571837 105 + 16180835 CCUAGCUUGACGCCCAGCAUGACUCCCCACGC-CACGCCGGGACAUGCCACACCGAUGCUGACCCCCGGCGGCAGCACACCCGUCGGAGUGAAGGCCAUGGCCAUG ....(((....(((..(((((..((((..((.-..))..)))))))))(((.(((((((((.((......)))))))......)))).)))..)))...))).... ( -33.80, z-score = -0.01, R) >dp4.chr4_group3 10671407 105 - 11692001 CCGAAUAUGACGCCCAGCAUGACGCCGCAUGC-CACUCCGGGCCAUGCCACACCGAUGCUCACACCUGGCGGCAGCACUCCCGUGGGAGUCAAAGCCAUGGCCAUG ..........((....(((((......)))))-.....))((((((((((................))))(((...(((((....)))))....)))))))))... ( -32.99, z-score = 0.63, R) >droPer1.super_1 7784851 105 - 10282868 CCGAAUAUGACGCCCAGCAUGACGCCGCAUGC-CACUCCGGGCCAUGCCACACCGAUGCUCACACCUGGCGGCAGCACUCCCGUGGGAGUCAAAGCCAUGGCCAUG ..........((....(((((......)))))-.....))((((((((((................))))(((...(((((....)))))....)))))))))... ( -32.99, z-score = 0.63, R) >droVir3.scaffold_12963 19022133 98 + 20206255 -------UGACGCCCAGCAUGACCCCUCAUGC-AACACCUGGACAUGCCACGCCCUUAUUAACACCCGGCGGCAGUACGCCCGUGGGCGUAAAGGCAAUGGCCAUG -------..(((((((((((((....))))))-.......((...((((..(((.............))))))).....))..)))))))...(((....)))... ( -34.32, z-score = -1.23, R) >droMoj3.scaffold_6500 8186165 98 - 32352404 -------UGACUCCGAGCAUGACGCCUCAUGC-AACGCCUGGGCAUGCCACACCUCUGAUGACACCUGGUGGAAGUACGCCCGUGGGCGUAAAGGCAAUGGCCAUG -------.........((((((....))))))-.((((((((((.(((..((((..((....))...))))...))).))))..))))))...(((....)))... ( -36.70, z-score = -1.36, R) >droGri2.scaffold_15252 6922178 98 + 17193109 -------UGACGCCCAGCAUGACGCCACAUGU-AACACCAGGACAUGGCACACCCAUGCUCACACCCGGUGGCAGCACACCCAUCGGCGUCAAAGCCAUGGCCAUG -------....(((..((.(((((((......-.......(..(((((.....)))))..)......((((......))))....)))))))..))...))).... ( -31.70, z-score = -0.91, R) >anoGam1.chrX 2988909 98 + 22145176 -------UGACGCC-GACACCGCACGGCACGACGACGCCGGGUCACGCGACCCCGCUGCUCACGCCCGGCGGCACGACGCCCAUCGGGCACAAGGCGAUGGCGAUG -------...((((-(.(.(((((((((........)))(((((....))))).).)))....((((((.(((.....)))..))))))....)).).)))))... ( -43.10, z-score = -1.07, R) >apiMel3.Group3 6793287 82 - 12341916 --------------------AACUCCUCUUAC-AACACCA---CAUCAAACUUCAAUUUUAACACCUAGUGGUGUAACACCAACAGGACCCAAAGCUAUGGGAUUG --------------------...((((.....-.((((((---(........................))))))).........))))((((......)))).... ( -15.42, z-score = -1.51, R) >triCas2.ChLG9 4366598 95 + 15222296 -------UGACGCC-GCAAACGCC--GCACGG-AACGCCAAGCCAUGCCACUCCGAUGCUGACUCCGGGCGGGUCAACUCCGGUCGGAGUCAAGGCGAUGGCCAUG -------....(((-(....((((--((((((-(..((........))...)))).)))(((((((((.((((.....)))).))))))))).)))).)))).... ( -42.40, z-score = -2.19, R) >consensus CC_AA_AUGACGCCCAGCAUGACGCCACAUGC_GACUCCGGGACAUGCCACACCCAUGCUGACACCCGGCGGCAGUACUCCCAUCGGAGUCAAGGCAAUGGCCAUG ...................................(((((((....((.........)).....)))))))((...(((((....)))))....)).......... (-15.00 = -15.85 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:10 2011