| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,720,436 – 13,720,527 |
| Length | 91 |
| Max. P | 0.563369 |
| Location | 13,720,436 – 13,720,527 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.06 |
| Shannon entropy | 0.41558 |
| G+C content | 0.50981 |
| Mean single sequence MFE | -29.55 |
| Consensus MFE | -18.47 |
| Energy contribution | -20.50 |
| Covariance contribution | 2.03 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13720436 91 - 24543557 ------------------UGGGUGGUUUGGGUGGCGUGGUUCGUUGCGCGGACAGCCGAACAGCGAGCUGAAAUUCGUCACAUAAAUUCGUGAUGAAAUGAAAUGAAAA ------------------..(((.(((((.(..(((.....)))..).))))).)))...(((....)))...((((((((........))))))))............ ( -30.10, z-score = -2.33, R) >droEre2.scaffold_4784 13726752 100 - 25762168 ---------UGGGUGGUUUGGGUGGCGUGGAUGGCGUGGAAAGCUGCGCGGACGGCCGAACAGCGAGCUCAAGUUCGACACAUAAAUUCGUGAUGCAAUGAAAUGAAAA ---------...(((((((((.((.((((...(((.......))).))))..)).))))))..(((((....))))).))).....(((((......)))))....... ( -28.30, z-score = -0.12, R) >droYak2.chr3L 13817410 109 - 24197627 UGGGUGGCUUUGGUGGUUUGGGUGGCUUGGGUUGCGUGGGUCGCUUCGCGGACAGCCGAACAGCGAGCUCAAAUUCGACACAUAAAUUCGUGAUGAAAUGAAAUGAAAA (((((.((((((((.((((((((((((((.(...).)))))))))...))))).)))))..)))..)))))..((((.(((........))).))))............ ( -29.70, z-score = 0.19, R) >droSec1.super_0 5882453 91 - 21120651 ------------------UGGGUGGUUUGGGUGGCGUGGUUCGCUGCGCGGACAGCCGAACAGCGAGCUCAAAAUCGUCACAUAAAUUCGUGAUGAAAUGAAAUGAAAA ------------------(((((...(((..((((...((((((...)))))).))))..)))...)))))...(((((((........)))))))............. ( -31.10, z-score = -2.33, R) >droSim1.chr3L 13106144 91 - 22553184 ------------------UGGGUGGUUUGGGUGGCGUGGUUCGCUGCGCGGACAGCCGAACAGCGAGCUCAAAUUCGUCACAUAAAUUCGUGAUGAAAUGAAAUGAAAA ------------------(((((...(((..((((...((((((...)))))).))))..)))...)))))..((((((((........))))))))............ ( -32.00, z-score = -2.50, R) >droAna3.scaffold_13337 1593560 87 + 23293914 --------------------GGCAGCCGAAGGGAAGCGGG-CGCCGCGCUGGAGGAGGUGC-GCAAAUACAAAUUCGUCACAUCAACCCGUGAUGAAAUGAAAGGAAAA --------------------.((..((....))..))(.(-((((.(......)..)))))-.).........((((((((........))))))))............ ( -26.10, z-score = -0.62, R) >consensus __________________UGGGUGGCUUGGGUGGCGUGGUUCGCUGCGCGGACAGCCGAACAGCGAGCUCAAAUUCGUCACAUAAAUUCGUGAUGAAAUGAAAUGAAAA .....................((.((((((.((((((((....))))))...)).)))))).)).........((((((((........))))))))............ (-18.47 = -20.50 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:13 2011