| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,716,526 – 13,716,645 |
| Length | 119 |
| Max. P | 0.525450 |
| Location | 13,716,526 – 13,716,645 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.52 |
| Shannon entropy | 0.44165 |
| G+C content | 0.35189 |
| Mean single sequence MFE | -25.20 |
| Consensus MFE | -9.74 |
| Energy contribution | -9.86 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13716526 119 - 24543557 UUAGCCAGCUUGACUCGUUUUUAUUCGAUACCACAAAUGGCUGACUAUAAUUUUAC-UUGCAAAAUAUAACCGAUAAUUGAACAGCAUUUUAUGUCGGAUAUUGAAAACGAGCUGCUGCU ..(((.(((..(.(((((((((((((((((....(((((.(((......(((((..-....))))).....(((...)))..))))))))..))))))))...)))))))))).)))))) ( -25.90, z-score = -2.30, R) >droEre2.scaffold_4784 13722821 119 - 25762168 UUAGCGCGUUUGCAUCGAUUUCAUUCGAUCACAAAAAGUCCUAAGUAUUAUUUCGC-UUGCAAAAUAUAACCGAUAAUUGAACAGCAUUUUAUGCCGGAUAUUGAAAGCGAGCUGCUGCU .(((((.(((((((((((......)))))........(((((((((........))-)))........................((((...)))).)))).......))))))))))).. ( -24.00, z-score = 0.27, R) >droYak2.chr3L 13813493 111 - 24197627 --------UAGUGAUCGCUUUCAUUCGAUCACAAAAACUCCUAAGUAUAAUUUCAC-UUGCAAACUAUAACCGAUAAUUGAACGGCAUUUCAUGCCGGAUAUUGAAAGCGAGUUGCUGCU --------(((..((((((((((....(((...........(((((........))-)))......................((((((...)))))))))..))))))))).)..))).. ( -27.80, z-score = -2.81, R) >droSec1.super_0 5878674 120 - 21120651 UUAGCCAGCUUGAAUCGUUUUUAUUCGAUAAGAAAAACGACUAACUAUAAUUUCACUUUAUAAAAUAAAACCGAUAAGUGAACAACAUUUUAUGUCGGAUAUUGAAAACGAGCUGCUGAU (((((.((((((..((((((((..........))))))))..........(((((.(((((...))))).((((((((((.....))))...))))))....))))).))))))))))). ( -26.90, z-score = -3.83, R) >droSim1.chrU 9229281 100 - 15797150 UUAGCCAGCUUGUCUCGUUUUUAUUCGAUAAGAAAAACGACAAACUAUAAUUUCACUUUUC--------------------ACAGCAUUUUAUGUCGGAUAUUGAAUACGAGCUGCUGCU .((((.(((((((.((((((((..........))))))))...........((((...(((--------------------(((........))).)))...)))).))))))))))).. ( -21.40, z-score = -1.82, R) >consensus UUAGCCAGCUUGAAUCGUUUUUAUUCGAUAACAAAAACGACUAACUAUAAUUUCAC_UUGCAAAAUAUAACCGAUAAUUGAACAGCAUUUUAUGUCGGAUAUUGAAAACGAGCUGCUGCU .....((((.....(((((((((.((((........................))............................(.((((...)))).)))...)))))))))...)))).. ( -9.74 = -9.86 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:12 2011