| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,713,098 – 13,713,188 |
| Length | 90 |
| Max. P | 0.973178 |
| Location | 13,713,098 – 13,713,188 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 82.13 |
| Shannon entropy | 0.24208 |
| G+C content | 0.56379 |
| Mean single sequence MFE | -27.70 |
| Consensus MFE | -24.45 |
| Energy contribution | -25.07 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.973178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13713098 90 + 24543557 CGUCGUCGUCGAAGGACUCGUGGCUGCGAUGGGAAUGCGGCCUGGAAUGGGUCUAUAGAUGGGGCGAAAUGUGAAUGCGAAUUGGGAGUG ((((.(((((...(((((((((((((((.......)))))))....))))))))...)))))))))........................ ( -28.80, z-score = -2.01, R) >droEre2.scaffold_4784 13719366 77 + 25762168 ---CGUCGUCGAAGGACUCAUGGCUGCGAUGGGAAUGCGGCCAGCAAUGGGUCUAUAGAUGCGA--AGAUGGGAGUGUGAGU-------- ---((.((((...(((((((((((((((.......))))))))....)))))))...)))))).--................-------- ( -25.50, z-score = -1.87, R) >droSim1.chr3L 13098589 83 + 22553184 CGUCGUCGUCGAAGGACUCGUGGCUGCGAUGGGAAUGCGGCCUGGAAUGGGUCUAUAGAUGGGGCGAAAUGUGAAUGCGAAUG------- ((((.(((((...(((((((((((((((.......)))))))....))))))))...))))))))).................------- ( -28.80, z-score = -2.49, R) >consensus CGUCGUCGUCGAAGGACUCGUGGCUGCGAUGGGAAUGCGGCCUGGAAUGGGUCUAUAGAUGGGGCGAAAUGUGAAUGCGAAU________ ((((.(((((...(((((((((((((((.......)))))))....))))))))...)))))))))........................ (-24.45 = -25.07 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:11 2011