| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,709,002 – 13,709,095 |
| Length | 93 |
| Max. P | 0.861951 |
| Location | 13,709,002 – 13,709,095 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.12 |
| Shannon entropy | 0.34496 |
| G+C content | 0.52135 |
| Mean single sequence MFE | -21.71 |
| Consensus MFE | -16.13 |
| Energy contribution | -16.47 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.861951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13709002 93 - 24543557 GCUGCCCUGAGUGCGUGUGUGGCAUUUCCGUUCAUUUGUUUUACUUUUGCCACACAACAAGCAACCUCCCCCUGCCCCAUCAUCUUGCCGCUU-------------------- ((.((...((((((.(((((((((.......................)))))))))....)))..)))....((......))....)).))..-------------------- ( -20.10, z-score = -1.51, R) >droSim1.chr3L 13094810 93 - 22553184 GCUGCCCUGAGUGCGUGUGUGGCAUUUCCGUUCAUUUGUUUUACUUUUGCCACACAACAAGCAACCUCUCCCUCCCCCACCAUCUUGCCGCUU-------------------- ((.((...((((((.(((((((((.......................)))))))))....)))..)))..................)).))..-------------------- ( -20.10, z-score = -2.14, R) >droSec1.super_0 5871154 93 - 21120651 GCUGCCCUGAGUGCGUGUGUGGCAUUUCCGUUCAUUUGUUUUACUUUUGCCACACAACAAGCAACCUCUCCCUGCCCCAGCAUCUUGCCGCUU-------------------- ((.((...((((((.(((((((((.......................)))))))))....)))..)))....(((....)))....)).))..-------------------- ( -24.20, z-score = -2.16, R) >droYak2.chr3L 13805606 87 - 24197627 GCUGCCCUGAGUGCGUGUGUGGCAUUUCCGUUCAUUUGUUUUACUUUUGCCACACAACAAGCAACCUGCCCCUG------CAUCUUGCCGCUU-------------------- (((......)))((((((((((((.......................)))))))))....((((..(((....)------))..)))))))..-------------------- ( -23.00, z-score = -1.56, R) >droEre2.scaffold_4784 13714877 92 - 25762168 GCUGCCCUGAGUGCGUGUGUGGCAUUUCCGUUCAUUUGUUUUACUUUUGCCACACAACAAGCAAGCUCUCCCUGCCGC-CCAUCCUGCCGCUU-------------------- ((.((...((((((.(((((((((.......................)))))))))....))..)))).....)).))-..............-------------------- ( -23.10, z-score = -1.39, R) >droWil1.scaffold_180698 466684 113 - 11422946 GUUGUCCUAGGUGCGUGUGUGGCAUUUCCGUUCAUUUGUUUUACUUUUGCCACAACUUCACCCACCCUUGCCACACUUGUAGUCCGCUCGUUUACUUCACUUCUCGCUACCUC ((.((....((((.((((((((((.......................)))))))....))).))))...)).))....(((((......................)))))... ( -19.75, z-score = -1.17, R) >consensus GCUGCCCUGAGUGCGUGUGUGGCAUUUCCGUUCAUUUGUUUUACUUUUGCCACACAACAAGCAACCUCUCCCUGCCCCACCAUCUUGCCGCUU____________________ ........((((((.(((((((((.......................)))))))))....)))..)))............................................. (-16.13 = -16.47 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:10 2011