| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,700,989 – 13,701,095 |
| Length | 106 |
| Max. P | 0.637982 |
| Location | 13,700,989 – 13,701,095 |
|---|---|
| Length | 106 |
| Sequences | 7 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.54 |
| Shannon entropy | 0.40458 |
| G+C content | 0.40708 |
| Mean single sequence MFE | -29.37 |
| Consensus MFE | -15.76 |
| Energy contribution | -15.64 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.637982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13700989 106 + 24543557 ---CUGCUGCUGC-UGUAUUUCUGCAUCUGUCUG---UAGUUGUGGAGUUGUGCGUGCCAGUGCAACUGAUUUUGUUGUUAUGGCUUGGCAAAGAUUUAUUUAUUUAUAUUGA------ ---.((((((.((-(.(((..(((((......))---)))..))).)))...))..((((..(((((.......)))))..))))..))))......................------ ( -27.90, z-score = -1.29, R) >droSim1.chr3L 13086575 106 + 22553184 ---CUGCUGCUGC-UGUAUUUCUGCAUUUGUAUG---UAGUUGUGGAGUUGUGCGUGCCAGUGCAACUGAUUUUGUUGUUAUGGCUUGGCAAAGAUUUAUUUAUUUAUAUUGA------ ---.((((((.((-(.(((..((((((....)))---)))..))).)))...))..((((..(((((.......)))))..))))..))))......................------ ( -29.30, z-score = -1.87, R) >droSec1.super_0 5863062 106 + 21120651 ---CUGCUGCUGC-UGUAUUUCUGCAUCUGUCUG---UAGUUGUGGAGUUGUGCGUGCCAGUGCAACUGAUUUUGUUGUUAUGGCUUGGCAAAGAUUUAUUUAUUUAUAUUGA------ ---.((((((.((-(.(((..(((((......))---)))..))).)))...))..((((..(((((.......)))))..))))..))))......................------ ( -27.90, z-score = -1.29, R) >droYak2.chr3L 13797493 113 + 24197627 CCUCUGCCUCCGCAUCUGCAUCUGCAUCUGUCUGCUGUAGUUGUGGAGUUGUGCGUGCCAGUGCAACUGAUUUUGUUGUUAUGGCUUGGCAAAGAUUUAUUUAUUUAUAUUGA------ .((.((((((((((.(((((...(((......)))))))).)))))).........((((..(((((.......)))))..))))..)))).))...................------ ( -34.00, z-score = -2.29, R) >droEre2.scaffold_4784 13706558 97 + 25762168 ------------C-CGUAUUUCUGCAUCUGUCUG---UUGCUGUGGAGUUGUGCGUGCCAGUGCAACUGAUUUUGUUGUUAUGGCUUGGCAAAGAUUUAUUUAUUUAUAUUGA------ ------------.-(((((..((.(((..((...---..)).))).))..)))))((((((((((((.......)))))....)).)))))......................------ ( -20.70, z-score = 0.04, R) >dp4.chrXR_group8 2489992 103 - 9212921 ---------------CCGUUGCCACAGUUGCACGA-GUGCGUAUAGAGAUGUGCGUGCCACUGCAACUGAUUUUGUUGUUAUGGAACGGCAAAGAUUUAUUUAUUUAUGCGAGUAUUGA ---------------...((((..((((((((...-(..((((((....))))))..)...)))))))).((((((((((....))))))))))..............))))....... ( -32.90, z-score = -2.70, R) >droPer1.super_36 585477 103 + 818889 ---------------CCGUUGCCACAGUUGCACGA-GUGCGUAUAGAGAUGUGCGUGCCACUGCAACUGAUUUUGUUGUUAUGGAACGGCAAAGAUUUAUUUAUUUAUGCGAGUAUUGA ---------------...((((..((((((((...-(..((((((....))))))..)...)))))))).((((((((((....))))))))))..............))))....... ( -32.90, z-score = -2.70, R) >consensus ___CUGC__C_GC_UGUAUUUCUGCAUCUGUCUG___UAGUUGUGGAGUUGUGCGUGCCAGUGCAACUGAUUUUGUUGUUAUGGCUUGGCAAAGAUUUAUUUAUUUAUAUUGA______ ..........................................(((((....(((..((((..(((((.......)))))..))))...)))....)))))................... (-15.76 = -15.64 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:24:08 2011