| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,653,286 – 13,653,396 |
| Length | 110 |
| Max. P | 0.828934 |
| Location | 13,653,286 – 13,653,396 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 89.13 |
| Shannon entropy | 0.18522 |
| G+C content | 0.51791 |
| Mean single sequence MFE | -27.34 |
| Consensus MFE | -26.46 |
| Energy contribution | -25.90 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13653286 110 - 24543557 GAAGUAAAGGAAAAUCUCGCACUUUGCAGCGGCGGCAGCUGCGUGCGUCAUGUGAACAAAUUUUCCAGAUGCUUUUCCA-ACCAACCAACCGACCGAU-GCCCCCACCUUUC-- ((((((..(((((((.(((((...(((((((((....))))).))))...)))))....)))))))...))))))....-..................-.............-- ( -27.00, z-score = -0.68, R) >droSim1.chr3L 13038319 111 - 22553184 GAAGCAAAGGAAAAUCUCGCACUUUGCAGCGGCGGCAGCUGCGUGCGUCAUGUGAACAAAUUUUCCAGAUGCUUUUCCA-ACCAACCAACCGAUGAUUAACCCCCCGCUCUC-- ((((((..(((((((.(((((...(((((((((....))))).))))...)))))....)))))))...))))))....-................................-- ( -29.00, z-score = -1.25, R) >droSec1.super_0 5815605 111 - 21120651 GAAGCAAAGGAAAAUCUCGCACUUUGCAGCGGCGGCAGCUGCGUGCGUCAUGUGAACAAAUUUUCCAGAUGCUUUUCCA-ACCAACCAACCGAUGAUUAACCCCCCGCUCUC-- ((((((..(((((((.(((((...(((((((((....))))).))))...)))))....)))))))...))))))....-................................-- ( -29.00, z-score = -1.25, R) >droYak2.chr3L 13747977 114 - 24197627 AAAGCGAAGGAAAAUCUCGCACUUUGCAGCGCCGGCAGCUGCGUGCGUCAUGUGAACAAAUUUUCCAGAUGCUUUUCCCAACCAACCAACCGACCGAUAAACCCUCCCCCCCUC ((((((..(((((((..(((((...(((((.......))))))))))...((....)).)))))))...))))))....................................... ( -25.50, z-score = -1.47, R) >droEre2.scaffold_4784 13655929 108 - 25762168 AAAGCAAAGGAAAAUCUCGCACUUUGCAGCGCCGGCAGCUGCGUGCGUCAUGUGAACAAAUUUUCCAGAUGCUUUUCCC----AACCAACCGACCGAUUAGCCCUCCCUUUC-- ((((((..(((((((..(((((...(((((.......))))))))))...((....)).)))))))...))))))....----.............................-- ( -26.20, z-score = -1.02, R) >consensus GAAGCAAAGGAAAAUCUCGCACUUUGCAGCGGCGGCAGCUGCGUGCGUCAUGUGAACAAAUUUUCCAGAUGCUUUUCCA_ACCAACCAACCGACCGAUAACCCCCCCCUCUC__ ((((((..(((((((..(((((...(((((.......))))))))))...((....)).)))))))...))))))....................................... (-26.46 = -25.90 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:58 2011