| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,651,208 – 13,651,303 |
| Length | 95 |
| Max. P | 0.557369 |
| Location | 13,651,208 – 13,651,303 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 87.51 |
| Shannon entropy | 0.23731 |
| G+C content | 0.36095 |
| Mean single sequence MFE | -16.80 |
| Consensus MFE | -11.50 |
| Energy contribution | -12.50 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13651208 95 + 24543557 UGUAUUUUUGAACCCAAAAAUAGAAAAAUGCAACU-----AACUCGAGCACACA--GU---ACGCGCAGAAAAUCGAGAAAAUAAACUUGAAAUGCGCAUUGAAG (.((((((((....)))))))).)....(((....-----.......)))..((--((---..(((((.....(((((........)))))..)))))))))... ( -17.80, z-score = -2.40, R) >droSim1.chr3L 13036233 95 + 22553184 UGUAUUUUUGAACCCAAAAAUAGAAAAAUGCAACU-----AACUCGAGCACACA--GU---ACGCGCAGAAAAUCGAGAAAAUAAACUUGAAAUGCGCAUUGAAG (.((((((((....)))))))).)....(((....-----.......)))..((--((---..(((((.....(((((........)))))..)))))))))... ( -17.80, z-score = -2.40, R) >droSec1.super_0 5813487 95 + 21120651 UGUAUUUUUGAACCCAAAAAUAGAAAAAUGCAACU-----AACUCGAGCACACA--GU---ACGCGCAGAAAAUCGAGAAAAUAAACUUGAAAUGCGCAUUGAAG (.((((((((....)))))))).)....(((....-----.......)))..((--((---..(((((.....(((((........)))))..)))))))))... ( -17.80, z-score = -2.40, R) >droYak2.chr3L 13745842 97 + 24197627 UGUAUUUUUGAACCCAAAAAUAGAAAAAUGCAACU-----AACUCGAGCACACACAGU---ACGCGCAGAAAAUCGAGAAAAUAAACUUGAAAUGCGCAUUGAAG (.((((((((....)))))))).)....(((....-----.......)))....((((---..(((((.....(((((........)))))..)))))))))... ( -17.80, z-score = -2.34, R) >droEre2.scaffold_4784 13653899 95 + 25762168 UGUAUUUUUGAACCCAAAAAUAGAAAAAUGCAACU-----AACUCGAGCACACA--GU---ACGCGCAGAAAAUCGAGAAAAUAAACUUGAAAUGCGCAUUGAAG (.((((((((....)))))))).)....(((....-----.......)))..((--((---..(((((.....(((((........)))))..)))))))))... ( -17.80, z-score = -2.40, R) >droAna3.scaffold_13337 1504086 105 - 23293914 UGUAUUUUUGAACCCAAAAAUAGAAAAAUGCAACACAUCGAGCACCAGCACAUACGGCUAGAUACAGCGAAAAUCGAGGAAAAUAACUUGAAAUGCGCACUGAAG (.((((((((....)))))))).)............(((.(((.............))).)))...(((....(((((........)))))....)))....... ( -17.52, z-score = -1.37, R) >dp4.chrXR_group8 2436018 96 - 9212921 UGUAUUUUUGCACCCAAAAAUAGAAAAAUGCAACA------AAACCAACACACACAAA---CGGGGAAAAAAAUCGAGAGAAAUAAGUUGAAAUGCGCAUUGAAG .(((((((.((.(((....................------.................---.)))........((....)).....)).)))))))......... ( -11.06, z-score = -0.12, R) >consensus UGUAUUUUUGAACCCAAAAAUAGAAAAAUGCAACU_____AACUCGAGCACACA__GU___ACGCGCAGAAAAUCGAGAAAAUAAACUUGAAAUGCGCAUUGAAG (.((((((((....)))))))).).......................................(((((.....(((((........)))))..)))))....... (-11.50 = -12.50 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:58 2011