| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,639,569 – 13,639,670 |
| Length | 101 |
| Max. P | 0.672254 |
| Location | 13,639,569 – 13,639,670 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 77.28 |
| Shannon entropy | 0.48191 |
| G+C content | 0.35649 |
| Mean single sequence MFE | -15.94 |
| Consensus MFE | -9.66 |
| Energy contribution | -9.83 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.672254 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13639569 101 + 24543557 ----ACUUUGCAGCGCGUCAUCUCUUUCUGGCCUU---AGC--AACUAAAUGUCAUAAACACAAUGUCAUGACAACUUUUGAAAUUUGAAUUUCAAAGCAAAAAUUUCUG- ----..(((((.((..((((........))))...---.))--.......((((((..((.....)).))))))...((((((((....)))))))))))))........- ( -18.30, z-score = -1.32, R) >droSim1.chr3L 13023312 101 + 22553184 ----ACUUUGCAGCGCGUCAUCUCUUUCUGGCCUU---AGC--AACUAAAUGUCAUAAACACAAUGUCAUGACAACUUUUGAAAUUUGAAUUUCAAAGCAAAAAUUUCUG- ----..(((((.((..((((........))))...---.))--.......((((((..((.....)).))))))...((((((((....)))))))))))))........- ( -18.30, z-score = -1.32, R) >droSec1.super_0 5801308 101 + 21120651 ----ACUUUGCAACGCGUCAUCUCUUUCUGGCCUA---AGC--AACUAAAUGUCAUAAACACAAUGUCAUGACAACUUUUGAAAUUUGAAUUUCAAAGCAAAAAUUUCUG- ----..(((((...((((((........))))...---.))--.......((((((..((.....)).))))))...((((((((....)))))))))))))........- ( -16.70, z-score = -1.43, R) >droYak2.chr3L 13733785 104 + 24197627 ----AGUUUGCAGCGCGUCAUCUCUUUCUGGCCGUCGCAGC--AACUAAAUGUCAUAAACACAAUGUCAUGACAACUUUUGAAAUUUGAAUUUCAAAGCAAAAAUUUGUG- ----....(((.(((.((((........))))))).)))((--.......((((((..((.....)).))))))...((((((((....))))))))))...........- ( -22.20, z-score = -0.87, R) >droEre2.scaffold_4784 13642145 101 + 25762168 ----ACUUUGCAGCGCGUCAUCUCUUUCUGGCCGU---AGC--AACUAAAUGUCAUAAACACAAUGUCAUGACAACUUUUGAAAUUUGAAUUUCAAAGCAAAAAUUUGUG- ----...((((.(((.((((........)))))))---.))--)).....((((((..((.....)).))))))...((((((((....))))))))((((....)))).- ( -20.90, z-score = -1.36, R) >droAna3.scaffold_13337 1492070 90 - 23293914 ---------------CGUCAUCUCGUCCUGGCCGU---AGC--AACUAAAUGUCAUAAACACAAUGUCAUGACAACUUUUGAAAUUUGAAUUUCAAAGCAAAAAUUUCUU- ---------------.(((((..(((..((...((---..(--(......))..))...))..)))..)))))...(((((((((....)))))))))............- ( -14.00, z-score = -1.01, R) >dp4.chrXR_group8 2422803 87 - 9212921 ------------------CAUCUCUUUCUGGUUGC---UGC--AACUAAAUGUCAUAAACACAAUGUCAUGACAACUUUUGAAAUUUGAAUUUCAAAGCAAAAAUGUCUC- ------------------............(((..---(((--.......((((((..((.....)).))))))...((((((((....)))))))))))..))).....- ( -13.60, z-score = -0.73, R) >droPer1.super_36 517116 87 + 818889 ------------------CAUCUCUUUCUGGUUGC---UGC--AACUAAAUGUCAUAAACACAAUGUCAUGACAACUUUUGAAAUUUGAAUUUCAAAGCAAAAAUGUCUC- ------------------............(((..---(((--.......((((((..((.....)).))))))...((((((((....)))))))))))..))).....- ( -13.60, z-score = -0.73, R) >droWil1.scaffold_180698 10849432 110 - 11422946 GCUUUCUAUCUCGCUCUAUAUAUCCCUCUCAUUCUCUUGGCUCAACUAAAUGUCAUAAACACAAUGUCAUGACAACUUUUGAAAUUUGAAUUUCAAAGCAAAAAUGUUUU- ............((....................................((((((..((.....)).))))))...((((((((....))))))))))...........- ( -11.70, z-score = -0.68, R) >droVir3.scaffold_13049 19779124 98 + 25233164 ---------CCUCUACCUCUCCGCCCACUCGCAGUGUGUGC--GACUC--UGUCAUAAACACAAUGUCAUGACAACUUUUGAAAUUUGAAUUUCAAAGCAAAAAUGUUCUC ---------............(((.(((.......))).))--)....--((((((..((.....)).))))))..(((((((((....)))))))))............. ( -16.60, z-score = -1.25, R) >droGri2.scaffold_15110 6974885 95 - 24565398 ---------ACCCCGCCCCUCCACGCCCCU---UUCUCAGC--GACUG--UGUCAUAAACACAAUGUCAUGACAACUUUUGAAAUUUGAAUUUCAAAGCAAAAAUGUUCUC ---------...............((....---...(((..--(((((--(((.....)))))..))).))).....((((((((....))))))))))............ ( -13.90, z-score = -1.46, R) >droMoj3.scaffold_6680 7473432 86 + 24764193 -------------GCCCGUAUCUCUUUCUCAC------------ACUCGCUGUCAUAAACACAAUGUCAUGACAACUUUUGAAAUUUGAAUUUCAAAGCAAAAAUGUUCUC -------------...................------------....((((((((..((.....)).))))))...((((((((....))))))))))............ ( -11.50, z-score = -1.12, R) >consensus _________GCAGCGCGUCAUCUCUUUCUGGCCGU___AGC__AACUAAAUGUCAUAAACACAAUGUCAUGACAACUUUUGAAAUUUGAAUUUCAAAGCAAAAAUGUCUG_ .......................................((.........((((((..((.....)).))))))...((((((((....))))))))))............ ( -9.66 = -9.83 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:57 2011