| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,605,942 – 13,606,032 |
| Length | 90 |
| Max. P | 0.525503 |
| Location | 13,605,942 – 13,606,032 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 82.06 |
| Shannon entropy | 0.35428 |
| G+C content | 0.43077 |
| Mean single sequence MFE | -18.30 |
| Consensus MFE | -11.31 |
| Energy contribution | -11.39 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13605942 90 + 24543557 CAACGCACACACGAGUAAAUCACUAAGUUACUGUGUCGCAUUGAUAAACCCUUAUCAAGCUGGCAUUUUUUUU------UCCAGGCA--------CACACCCUC-- .............(((((.........)))))((((.((.(((((((....))))))).((((.(........------))))))))--------)))......-- ( -15.30, z-score = -1.07, R) >droPer1.super_36 479344 79 + 818889 CUGCGCACACACGAGUAAAUCACUAAGUUACUGUGUCGCAUUGAUAAACCCUUAUCAAGUGGGUUUUUU-------------AGGCG--------CACAU------ .(((((..((((.(((((.........)))))))))....((((.((((((.........)))))).))-------------)))))--------))...------ ( -21.80, z-score = -2.26, R) >dp4.chrXR_group8 2385014 79 - 9212921 CUGCGCACACACGAGUAAAUCACUAAGUUACUGUGUCGCAUUGAUAAACCCUUAUCAAGUGGGUUUUUU-------------AGGCG--------CACAU------ .(((((..((((.(((((.........)))))))))....((((.((((((.........)))))).))-------------)))))--------))...------ ( -21.80, z-score = -2.26, R) >droAna3.scaffold_13337 1458292 84 - 23293914 CAACGCACACACGAGUAAAUCACUAAGUUACUGUUUCGCAUUGAUAAACCCUUAUCAAGCAGGCUUUUUU------------AGGGA--------CACACUCGU-- ..........((((((...((.(((((.....((((.((.(((((((....)))))))))))))...)))------------)).))--------...))))))-- ( -19.20, z-score = -2.85, R) >droEre2.scaffold_4784 13606811 87 + 25762168 CAACGCACACACGAGUAAAUCACUAAGUUACUGUGUCGCAUUGAUAAACCCUUAUCAAGCUGGCAUUUUUU---------CCAGGCA--------CACACCCUC-- .............(((((.........)))))((((.((.(((((((....))))))).((((........---------)))))))--------)))......-- ( -16.10, z-score = -1.31, R) >droYak2.chr3L 13698856 87 + 24197627 CAACGCACACACGAGUAAAUCACUAAGUUACUGUGUCGCAUUGAUAAACCCUUAUCAAGCUGGCAUUUUUU---------CCAGGCA--------CACACCCUC-- .............(((((.........)))))((((.((.(((((((....))))))).((((........---------)))))))--------)))......-- ( -16.10, z-score = -1.31, R) >droSec1.super_0 5767634 88 + 21120651 CAACGCACACACGAGUAAAUCACUAAGUUACUGUGUCGCAUUGAUAAACCCUUAUCAAGCUGGCAUUUUUUU--------CCAGGCA--------CACACCCUC-- .............(((((.........)))))((((.((.(((((((....))))))).((((.(.....).--------)))))))--------)))......-- ( -15.60, z-score = -1.12, R) >droSim1.chr3L 12989435 88 + 22553184 CAACGCACACACGAGUAAAUCACUAAGUUACUGUGUCGCAUUGAUAAACCCUUAUCAAGCUGGCAUUUUUUU--------CCAGGCA--------CACACCCUC-- .............(((((.........)))))((((.((.(((((((....))))))).((((.(.....).--------)))))))--------)))......-- ( -15.60, z-score = -1.12, R) >droWil1.scaffold_180698 10804205 106 - 11422946 CUACGCACACACGAGUAAAUCACUAAGUUACUGUGUCGCAUUGAUAAACCCUUAUCAAGUGAAGGUUUUUUUCGCCGUAGCCCCAGAGCGGGAGUCAUACACACAC ....((..((((.(((((.........))))))))).)).(((((((....)))))))(((..(((.......)))((((((((.....))).))..))).))).. ( -23.10, z-score = -0.76, R) >droMoj3.scaffold_6680 17240468 86 - 24764193 CCACGCACACACGAGUAAAUCACUAAGUUACUGUGUCGCAUUGAUAAACCCUUAUCAAGUGGGGUUUUUUUU----------ACUCA--------CACACCCAC-- .(((((..((((.(((((.........))))))))).)).(((((((....))))))))))((((.......----------.....--------...))))..-- ( -18.66, z-score = -1.85, R) >droVir3.scaffold_13049 5405848 97 - 25233164 CUACGCACACACGAGUAAAUCACUAAGUUACUGUGUCGCAUUGAUAAACCCUUAUCAAGUGAGUUUUUUUUUUUUCACUCCGACUCAG-------UACACACAC-- .(((.(......).))).........(((((((.((((..(((((((....)))))))(((((..........)))))..)))).)))-------)).))....-- ( -19.90, z-score = -2.44, R) >droGri2.scaffold_15110 17545980 92 + 24565398 CUACGCACACACGAGUAAAUCACUAAGUUACUGUGUCGCUUUGAUAAACCCUUAUCAAGUGGGGUUUUUUUU----GCUUUGACUCA--------CAAACACAU-- ....((..((((.(((((.........))))))))).)).(((((((....)))))))(((((.........----.......))))--------)........-- ( -16.39, z-score = -0.37, R) >consensus CAACGCACACACGAGUAAAUCACUAAGUUACUGUGUCGCAUUGAUAAACCCUUAUCAAGCGGGCUUUUUUUU________CCAGGCA________CACACCCUC__ ....((..((((.(((((.........))))))))).)).(((((((....)))))))................................................ (-11.31 = -11.39 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:49 2011