| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,582,591 – 13,582,683 |
| Length | 92 |
| Max. P | 0.757305 |
| Location | 13,582,591 – 13,582,683 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 78.70 |
| Shannon entropy | 0.38267 |
| G+C content | 0.37047 |
| Mean single sequence MFE | -22.92 |
| Consensus MFE | -16.30 |
| Energy contribution | -16.72 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.757305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13582591 92 - 24543557 --AGACAUUUGUUUGCU------UGUGUGUGUACACAAAAUAUUAUUUUCUUAAUUGGUGUUUAUUGUGUGUCAAACGCACACGCACACAUACACUCGCA --.((....(((.(((.------(((((((.((((((((((((((.((....)).)))))))..)))))))....))))))).))).))).....))... ( -24.40, z-score = -1.35, R) >droSim1.chr3L 12961035 96 - 22553184 --AGACAUUUGUUUGCUUCUGUGUAUGUGUGUACACAAAAUAUUAUUUUCUUAAUUGGUGUUUAUUGUGUGUCAAACGCACACGCACACCCACACGCA-- --((((....))))((...((((..(((((((((((.....((((......))))..)))).....(((((.....))))))))))))..)))).)).-- ( -25.30, z-score = -1.24, R) >droSec1.super_0 5744571 87 - 21120651 --AGACAUUUGUUUGCUUCUGUGUGUGUGUGUACACAAAAUAUUAUUUUCUUAAUUGGUGUUUAUUGUGUGUCAAACGCACACGCACAC----------- --((((....)))).....((((((((((((((((((((((((((.((....)).))))))))....)))))...))))))))))))).----------- ( -27.40, z-score = -2.71, R) >droYak2.chr3L 13674931 82 - 24197627 --AGACAUUUGUUUGCC------UGUGUGUGUACACAAAAUAUUAUUUUCUUAAUUGGUGUUUAUUGUGUGUCAAACGCACACCCACACA---------- --.......(((.((..------(((((((.((((((((((((((.((....)).)))))))..)))))))....)))))))..)).)))---------- ( -19.50, z-score = -1.07, R) >droAna3.scaffold_13337 1430633 80 + 23293914 --AGACGCCUGCGC--------UUGUGUGUGUACACAAAAUAUUAUUUUCUUAAUUGGUGUUUAUUGCGUGUCAGAUGCACGCACACACA---------- --(((((((.....--------((((((....))))))...((((......)))).)))))))..(((((((.....)))))))......---------- ( -20.70, z-score = -0.31, R) >droMoj3.scaffold_6680 17213322 90 + 24764193 GGAGACAUUUUGUU---------UGCCUGUAUACACAAAAUAUUAUAUUCUUAAUUGGUGUUUAUUGUGUGUCACACACACACACACACACUCCGACAC- ((((..(((((((.---------((......)).)))))))................((((....((((((.....))))))...)))).)))).....- ( -20.20, z-score = -1.57, R) >consensus __AGACAUUUGUUUGCU______UGUGUGUGUACACAAAAUAUUAUUUUCUUAAUUGGUGUUUAUUGUGUGUCAAACGCACACGCACACA__________ ........................((((((((((((.....((((......))))..)))).....(((((.....)))))))))))))........... (-16.30 = -16.72 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:46 2011