| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,578,534 – 13,578,586 |
| Length | 52 |
| Max. P | 0.617772 |
| Location | 13,578,534 – 13,578,586 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 98.46 |
| Shannon entropy | 0.02777 |
| G+C content | 0.46923 |
| Mean single sequence MFE | -13.82 |
| Consensus MFE | -14.14 |
| Energy contribution | -13.82 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.75 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13578534 52 - 24543557 CCCGAAGGGCUUUCCCAGCUGGAGGGUCUUAAUUUUCAGCAUUGUUGAUGUU .....((((((((((.....)))))))))).....(((((...))))).... ( -13.50, z-score = -0.33, R) >droSec1.super_0 5740538 52 - 21120651 CCCGAAAGGCUUUCCCAGCUGGAGGGUCUUAAUUUUCAGCAUUGUUGAUGUU .....((((((((((.....)))))))))).....(((((...))))).... ( -13.80, z-score = -0.88, R) >droSim1.chr3L 12957021 52 - 22553184 CCCGAAAGGCUUUCCCAGCUGGAGGGUCUUAAUUUUCAGCAUUGUUGAUGUU .....((((((((((.....)))))))))).....(((((...))))).... ( -13.80, z-score = -0.88, R) >droYak2.chr3L 13670705 52 - 24197627 CCCGAAAGGCUUUCCCAGCUGGAGGGUCUUAAUUUUCAGCAUUGUUGAUGUU .....((((((((((.....)))))))))).....(((((...))))).... ( -13.80, z-score = -0.88, R) >droEre2.scaffold_4784 13578651 52 - 25762168 CCCGAGAGGCUUUCCCAGCUGGAGGGUCUUAAUUUUCAGCAUUGUUGAUGUU .....((((((((((.....)))))))))).....(((((...))))).... ( -14.20, z-score = -0.81, R) >consensus CCCGAAAGGCUUUCCCAGCUGGAGGGUCUUAAUUUUCAGCAUUGUUGAUGUU .....((((((((((.....)))))))))).....(((((...))))).... (-14.14 = -13.82 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:46 2011