| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,563,106 – 13,563,203 |
| Length | 97 |
| Max. P | 0.700800 |
| Location | 13,563,106 – 13,563,203 |
|---|---|
| Length | 97 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 79.21 |
| Shannon entropy | 0.43689 |
| G+C content | 0.41360 |
| Mean single sequence MFE | -21.78 |
| Consensus MFE | -13.24 |
| Energy contribution | -13.53 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13563106 97 + 24543557 -------------CACCACCAUCCCAAAAUUUUGGCUUGCCGUAUGUUUGAUAAAAGUUCAAAACCCUGAACUUUGCGCAUGUUUAAACAACGCA-AACGCAAAAAUGCUG -------------......((..((((....))))..))..((((.((((...((((((((......))))))))(((..(((....))).))).-....)))).)))).. ( -18.70, z-score = -1.32, R) >droSim1.chr3L 12947109 97 + 22553184 -------------CACCAUCACCCCCAAAAUUUGGCUUGCCGUAUGUUUGAUAAAAGUUCAAAACCCUGAACUUUGCGCAUGUUUAAACAACGCA-AACGCAAAAAUGCUG -------------....................((....))((((.((((...((((((((......))))))))(((..(((....))).))).-....)))).)))).. ( -17.50, z-score = -1.05, R) >droSec1.super_0 5730640 97 + 21120651 -------------CGCCAUCGCCCCGAAAUUUUGGCUUGCCGUAUGUUUGAUAAAAGUUCAAAACCCUGAACUUUGCGCAUGUUUAAACAACGCA-AACGCAAAAAUGCUG -------------.((((..............))))((((.((.(((((((..((((((((......))))))))........))))))))))))-)..(((....))).. ( -20.84, z-score = -1.13, R) >droYak2.chr3L 13660624 94 + 24197627 --------------GCCAUC--CCCCAAUUUUUGGCUUGCCGUAUGUUUGAUAAAAGUUCAAAACCCUGAACUUUGCGCAUGUUUAAACAACGCA-AACGCAAAAAUGCUG --------------((((..--..........))))((((.((.(((((((..((((((((......))))))))........))))))))))))-)..(((....))).. ( -20.70, z-score = -2.05, R) >droEre2.scaffold_4784 13568547 91 + 25762168 -------------------GCCCCCCAAUUUUUGGCUUGCCGUAUGUUUGAUAAAAGUUCAAAACCCUGAACUUUGCGCAUGUUUAAACAACGCA-AACGCAAAAAUGCUG -------------------........((((((((.((((.((.(((((((..((((((((......))))))))........))))))))))))-).).))))))).... ( -19.90, z-score = -1.90, R) >droAna3.scaffold_13337 1416668 87 - 23293914 -----------------------ACUCUGGAUUGGCUCGGCGUGUGUUUGAUAAAAGUUUAGAACCACGAACUUUGCUCAUGUUUAAACAACGCA-AAAGCAAAAAUGCUG -----------------------.....(.(((.(((..((((.(((((((..(((((((........)))))))........))))))))))).-..)))...))).).. ( -18.00, z-score = -0.24, R) >droPer1.super_36 437535 105 + 818889 -----UCCGUUCCGCCUCGGAUCGGAUCGGGUUGGCUUGGCGUAUGUUUGAUAAAAGUUCAAAAACCCGAACUUUGCGCAUGUUUAAACAACACA-AACGCAAAAAUGCUG -----((((.((((...)))).))))(((((((.((...)).....(((((.......))))))))))))..((((((..(((.........)))-..))))))....... ( -28.20, z-score = -1.08, R) >droWil1.scaffold_180698 670087 83 + 11422946 --------------------------AAAUUUUUGGU--CCGUAUGUUUGAUAAAAGUUCAAAACCCUGAACUUUGAGCAUGUUUAAACAACGCAGAACGCAAAAAUGCUG --------------------------..(((((((((--.(((.(((((((..((((((((......))))))))........))))))))))....)).))))))).... ( -16.60, z-score = -1.47, R) >droVir3.scaffold_13049 5360704 91 - 25233164 ------------------UUCUGUGCCUGGUUUGGCAUGGCGUAUGUUUGAUAAAAGUUCAAA-CCCUGAACUUUGCGCAUGUUUAAACAACGCA-AACGCAAAAAUGCUG ------------------....(((((......))))).((((.(((((((..((((((((..-...))))))))........))))))))))).-...(((....))).. ( -25.40, z-score = -1.84, R) >droMoj3.scaffold_6680 17190081 91 - 24764193 ------------------UGCUGUGCCUGGUUCGGCAUGGCGUAUGUUUGAUAAAAGUUCAAA-CCCUGAACUUUGCGCAUGUUUAAACAACGCA-AACGCAAAAAUGCUG ------------------.((((((((......))))))))((((.((((...((((((((..-...))))))))(((..(((....))).))).-....)))).)))).. ( -28.60, z-score = -2.48, R) >droGri2.scaffold_15110 17499551 109 + 24565398 UGCUAUAACCCUAAAAGUAUGUGUGCCUGGUUUGGUGUGGCGUAUGUUUGAUAAAAGUUCAAA-CCCUGAACUUUGCGCAUGUUUAAACAACGCA-AACGCAAAAAUGCUG ...............(((((.((((((......)))...((((.(((((((..((((((((..-...))))))))........))))))))))).-...)))...))))). ( -25.10, z-score = -0.55, R) >consensus __________________UC_UCCCCAAGGUUUGGCUUGCCGUAUGUUUGAUAAAAGUUCAAAACCCUGAACUUUGCGCAUGUUUAAACAACGCA_AACGCAAAAAUGCUG .........................................((((.((((...((((((((......))))))))(((..(((....))).)))......)))).)))).. (-13.24 = -13.53 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:42 2011