| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,534,855 – 13,534,969 |
| Length | 114 |
| Max. P | 0.801419 |
| Location | 13,534,855 – 13,534,969 |
|---|---|
| Length | 114 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 85.45 |
| Shannon entropy | 0.31734 |
| G+C content | 0.69181 |
| Mean single sequence MFE | -54.45 |
| Consensus MFE | -38.17 |
| Energy contribution | -37.18 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13534855 114 - 24543557 UCGCUGCCGUCGCCGACCAUGCCCAACUUCAACAUGGGCGCCAACACGCCCAACGGACAGCCCGGCGG---AGCGGCCGCCGCUGCUGCUGCGGCGGCUGCCGCGGACGGCGUCUUC ..(.(((((((.(((.((................((((((......))))))..((.....)))))))---.(((((.((((((((....)))))))).))))).))))))).)... ( -61.70, z-score = -2.85, R) >droSim1.chr3L 12932928 114 - 22553184 UCGCUGCCGUCGCCGACCAUGCCCAACUUCAAUAUGGGCGCCAACACGCCCAAUGGACAGCCAGGCGG---AGCGGCCGCUGCUGCUGCUGCGGCGGCUGCCGCGGACGGCGUCUUC ..(.(((((((.(((.((................((((((......)))))).(((....))))))))---.(((((.((((((((....)))))))).))))).))))))).)... ( -59.90, z-score = -2.73, R) >droSec1.super_0 5702560 114 - 21120651 UCGCUGCCGUCGCCGACCAUGCCCAACUUCAAUAUGGGCGCCAACACGCCCAAUGGACAGCCAGGCGG---AGCGGCCGCUGCUGCUGCUGCGGCGGCUGCCGCGGACGGCGUCUUC ..(.(((((((.(((.((................((((((......)))))).(((....))))))))---.(((((.((((((((....)))))))).))))).))))))).)... ( -59.90, z-score = -2.73, R) >droYak2.chr3L 13630474 114 - 24197627 UCGCUGCCCUCGCCGACCAUGCCCAACUUCAACAUGGGCGCCAACACGCCCAACGGACAGCCCGGCGG---AGCGGCUGCCGCUGCUGCUGCGGCAGCUGCCGCGGACGGCGUCUUC .(((((.((((((((...................((((((......))))))..((....))))))))---.(((((((((((.......)))))))))))...)).)))))..... ( -55.00, z-score = -1.97, R) >droEre2.scaffold_4784 13539934 114 - 25762168 UCGCUGCCCUCGCCGACCAUGCCCAACUUCAAUAUGGGCGCCAACACGCCCAACGGACAGCCCGGCGG---AGCGGCCGCCGCUGCUGCUGCGGCGGCUGCCGCGGACGGCGUCUUC .(((((.((((((((...................((((((......))))))..((....))))))))---.(((((.((((((((....)))))))).))))))).)))))..... ( -60.70, z-score = -3.12, R) >droAna3.scaffold_13337 1386616 114 + 23293914 UCCCUGCCCUCGCCCACCAUGCCCAACUUCAACAUGGGCGCCAACACGCCCAACGGUCAGCCCGGUGG---CGCUGCCGCUGCUGCUGCCGCGGCCGCCGCGGCGGACGGCGUUUUC .....(((.((..(((((................((((((......))))))..((....)).)))))---((((((.((.(((((....))))).)).)))))))).)))...... ( -50.50, z-score = -0.77, R) >dp4.chrXR_group8 2310524 111 + 9212921 UCUUUGCCCUCGCCGACCAUGCCCAACUUCAGCAUGGGCGCCAACACGCCCAACGGCCAGCCCGGUGG---AGCUGCC---GCGGCUGCAGCAGCUGCUGCGGCGGACGGGGUCUUC .....((((.(((((.((..(((...........((((((......)))))).((((.(((((...))---.))))))---).))).(((((....)))))))))).)))))).... ( -51.40, z-score = -0.77, R) >droPer1.super_36 405332 111 - 818889 UCUUUGCCCUCGCCGACCAUGCCCAACUUCAGCAUGGGCGCCAACACGCCCAACGGCCAGCCCGGCGG---AGCUGCC---GCGGCUGCAGCAGCUGCUGCGGCGGACGGGGUCUUC .....((((.(((((.((.............((.((((((......))))))...)).(((((((((.---...))))---).))))(((((....)))))))))).)))))).... ( -52.00, z-score = -0.83, R) >droWil1.scaffold_180698 10715691 117 + 11422946 UCGCUGCCAUCCCCAACUAUGCCCAAUUUCAAUAUGGGCGCCAAUACACCCAACGGCCAGCCAGGUGGAGCAGCUGCUGCUGCCGCUGCGGCCGCUGCAGCAGCGGAUGGUGUAUUC ..((.(((((((........(((((.........)))))((.....((((....((....)).))))..)).((((((((.((.((....)).)).))))))))))))))))).... ( -49.00, z-score = -1.25, R) >droVir3.scaffold_13049 5326084 114 + 25233164 UCGCUGCCCUCGCCAACGAUGCCCAACUUCAAUAUGGGCGCCAAUACGCCCAAUGGCCAGCCCGGCGG---GGCUGCAGCCGCCGCUGCUGCCGCUUCAGUUGCGGAUGGUGUCUUC ..((.((((.((((....................((((((......))))))..((....)).)))))---))).)).((((((((.((((......)))).)))).))))...... ( -48.90, z-score = -0.98, R) >droMoj3.scaffold_6680 17154113 114 + 24764193 UCGCUGCCCUCGCCGACGAUGCCCAACUUUAAUAUGGGCGCCAAUACGCCCAAUGGGCAGCCAGGAGG---CGCUGCCGCCGCUGCUGCAGCUGCCUCGGUGGCCGACGGUGUCUUC ..((((((((((....)))...............((((((......))))))..)))))))..(((((---((((((.(((((((..((....))..))))))).).)))))))))) ( -54.80, z-score = -2.32, R) >droGri2.scaffold_15110 17463802 114 - 24565398 UCGCUGCCAUCGCCAACGAUGCCCAACUUCAAUAUGGGCGCCAAUACGCCCAAUGGCCAGCCGGGUGG---CGCUGCAGCUGCCGCUGCUGCUGCUUCAGUGGCGGAUGGUGUCUUC ..(((((...((((......((((..........((((((......))))))..((....))))))))---))..))))).((((((((..(((...)))..)))).))))...... ( -49.60, z-score = -1.11, R) >consensus UCGCUGCCCUCGCCGACCAUGCCCAACUUCAAUAUGGGCGCCAACACGCCCAACGGACAGCCCGGCGG___AGCUGCCGCCGCUGCUGCUGCGGCUGCUGCCGCGGACGGCGUCUUC .(((((((..((((....................((((((......))))))..((....)).)))).....(((((....((.((....)).))....))))))).)))))..... (-38.17 = -37.18 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:39 2011