| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,514,871 – 13,514,986 |
| Length | 115 |
| Max. P | 0.704498 |
| Location | 13,514,871 – 13,514,986 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 87.24 |
| Shannon entropy | 0.22394 |
| G+C content | 0.42223 |
| Mean single sequence MFE | -26.82 |
| Consensus MFE | -22.30 |
| Energy contribution | -21.46 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.704498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13514871 115 - 24543557 UCUCUCUCUUAAUUCUGAAUUCCGAAUCCAGCGAUAUGGCAAUUCUGGCUUAAAAAAUAUAAGCCACCUGGCCGAAUUGGCCAACAGAACGAAAACGAAUCUGAUUUGAAUGGAA ................((((((((.(((....))).))).)))))(((((((.......)))))))(((((((.....))))).((((.((....))..))))........)).. ( -26.90, z-score = -1.81, R) >droEre2.scaffold_4784 13527789 99 - 25762168 ---------------UCGAUUCUGAAUCCAGCGAUGUGGCAGUUCUGGCUUAC-AAAUAUUGGCCACCUGGCCGAAUUGGCUAACAGAACGAAAACGAAUCUGAUUUGAAUGGAA ---------------((.((((.(((((.((...(((....((((((.....(-((...((((((....)))))).))).....))))))....)))...))))))))))).)). ( -29.10, z-score = -2.48, R) >droYak2.chr3L 13618125 108 - 24197627 -------UCUCUCUCUUCAUUCUGAAUCCAGCGAUGUGGCAGUGCUGGCUUACAAAAUAUUGGCCACCUGGCCGAGUUGGCCAACAGAACGAAAACGAAUCUGAUUUGAAUGGAA -------........(((((((((((.((((((.((...)).)))))).)).)).....(((((((.((.....)).)))))))((((.((....))..))))....))))))). ( -28.20, z-score = -0.75, R) >droSec1.super_0 5690322 107 - 21120651 --------UUAAUUCUGAAUUCCGAAUCCAGCGAUAUGGCAAUUCUGGCUUAAAAUAUAUUGGCCACCUGGCCGAAUUGGCCAACAGAACGAAAACGAAUCUGAUUUGAAUGGAA --------...((((.((((((((.(((....))).))).)))))(((((...(((...((((((....)))))))))))))).((((.((....))..))))....)))).... ( -24.70, z-score = -1.18, R) >droSim1.chr3L 12920330 107 - 22553184 --------UUAAUUCUGAAUUCCGAAUCCAGCGAUAUGGCAAUUCUGGCUUAAAAAAUAUUGGCCACCUGGCCGAAUUGGCCAACAGAACGAAAACGAAUCUGAUUUGAAUGGAA --------...((((.((((((((.(((....))).))).)))))(((((.....(((.((((((....)))))))))))))).((((.((....))..))))....)))).... ( -25.20, z-score = -1.39, R) >consensus ________UUAAUUCUGAAUUCCGAAUCCAGCGAUAUGGCAAUUCUGGCUUAAAAAAUAUUGGCCACCUGGCCGAAUUGGCCAACAGAACGAAAACGAAUCUGAUUUGAAUGGAA ................((((((((.(((....))).))).)))))(((((...........)))))(((((((.....))))).((((.((....))..))))........)).. (-22.30 = -21.46 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:38 2011