| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,481,683 – 13,481,746 |
| Length | 63 |
| Max. P | 0.940330 |
| Location | 13,481,683 – 13,481,746 |
|---|---|
| Length | 63 |
| Sequences | 8 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 75.56 |
| Shannon entropy | 0.44593 |
| G+C content | 0.39366 |
| Mean single sequence MFE | -13.69 |
| Consensus MFE | -11.93 |
| Energy contribution | -11.59 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.940330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13481683 63 + 24543557 GCGAACACUGUGCGAACGCAUAAACACUCGACGAAUCCGAGAAAUGUUUUAUUUUCGUACAAA------------------- ........((((((((.....(((((((((.......))))...)))))....))))))))..------------------- ( -15.20, z-score = -2.17, R) >droSim1.chr3L 12885389 63 + 22553184 GCGAACACUGUGCGAACGCAUAAACACUCGACGAAUCCGAGAAAUGUUUUAUUUUCGUACAAA------------------- ........((((((((.....(((((((((.......))))...)))))....))))))))..------------------- ( -15.20, z-score = -2.17, R) >droSec1.super_0 5656995 62 + 21120651 GCGAACACUGUGCGAACGCAUAAACACUCGACGAAUCCGAGAAAUGUUUUAUUUUCGUACAA-------------------- ........((((((((.....(((((((((.......))))...)))))....)))))))).-------------------- ( -15.20, z-score = -2.16, R) >droYak2.chr3L 13584530 63 + 24197627 GCGAACACUGUGCGAACGCAUAAACACUCGACGUAUCCGAGAAAUGUUUUAUUUUCGUACAAA------------------- ........((((((((.....(((((((((.......))))...)))))....))))))))..------------------- ( -15.20, z-score = -1.86, R) >droEre2.scaffold_4784 13494629 63 + 25762168 GCGAACACUGUGCGAACGCAUAAACACUCGACGAAUCCGAGAAAUGUUUUAUUUUCGUACAAA------------------- ........((((((((.....(((((((((.......))))...)))))....))))))))..------------------- ( -15.20, z-score = -2.17, R) >droAna3.scaffold_13337 1341100 78 - 23293914 GUGACCACUGCUCGGACUCAUAAACUUGCAACGUAUCUGAGAAAUGUUU-AUUUUUGAAAGAAACAAAAAGCAACAACC--- ..........((((((..(.............)..))))))...((((.-.((((((.......))))))..))))...--- ( -9.72, z-score = 0.21, R) >dp4.chrXR_group8 2258616 82 - 9212921 GCAGGCACUGUGCGUACGCAUAAACACUCGACAUAUCUGAGAAAUGUUUUAUUUUUGUACAAUAAGGCAAAAAAAAAGAAGA ..(((((.(((((....)))))....((((.......))))...)))))..(((((((........)))))))......... ( -11.90, z-score = 0.42, R) >droPer1.super_36 353790 82 + 818889 GCAGGCACUGUGCGUACGCAUAAACACUCGACAUAUCUGAGAAAUGUUUUAUUUUUGUACAAUAAGGCAAAAAAAAAGAAGA ..(((((.(((((....)))))....((((.......))))...)))))..(((((((........)))))))......... ( -11.90, z-score = 0.42, R) >consensus GCGAACACUGUGCGAACGCAUAAACACUCGACGAAUCCGAGAAAUGUUUUAUUUUCGUACAAA___________________ ........((((((((.....(((((((((.......))))...)))))....))))))))..................... (-11.93 = -11.59 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:37 2011