| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,466,326 – 13,466,424 |
| Length | 98 |
| Max. P | 0.635858 |
| Location | 13,466,326 – 13,466,424 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 77.07 |
| Shannon entropy | 0.40998 |
| G+C content | 0.50871 |
| Mean single sequence MFE | -31.35 |
| Consensus MFE | -18.79 |
| Energy contribution | -20.30 |
| Covariance contribution | 1.51 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.635858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13466326 98 - 24543557 ------------CAGGAGUCGGUCGUGAAUGCAGUUAAUUAGCUGUGACCUGAACGGGAAAGUGGAAUUGCAGAUAGAGUUCCGCUGCUAAGGGAAACGGAUGCAUUCCG- ------------...........((.(((((((.....(((((.....(((....)))..(((((((((........)))))))))))))).(....)...)))))))))- ( -29.20, z-score = -1.44, R) >droWil1.scaffold_180698 10628326 99 + 11422946 ------------UGCUUUUGGGUCCUGAAUGCAGUUAAUUAGCUUCAACAUCCGGAAAAGAUUUAAAUUGUGGCCAUAAAACCCCUGGCAAACGAGCAGAACCCACCAAGC ------------.((((.(((((.(((..((.((((....)))).))....................((((.((((.........))))..)))).))).)))))..)))) ( -20.80, z-score = 0.07, R) >droEre2.scaffold_4784 13478411 98 - 25762168 ------------CAGGACUGGGUCUUGAAUGCAGUUAAUUAGCUGUGACCUGAGCGGGAAAGCGGAAUUGCAGAUAGAGUUCCGCUGCUGGGGGAAACGGAUGCAUUCCG- ------------..(((.((.((((.....((((((....))))))..(((.(((.....(((((((((........)))))))))))).))).....)))).)).))).- ( -35.50, z-score = -2.58, R) >droYak2.chr3L 13568899 110 - 24197627 CAGGACUCGGACUCGUUCUCGGUCUCGAAUGCAGUUAAUUAGCUGUGACCUGGGCGGGAAAGUGGAAUUGCAGAUAGAGUUCCGCUGCUGAGGGAAACGGAUGCAAUCCG- ..((((((((.(((((((..((((......((((((....)))))))))).)))))))..(((((((((........))))))))).)))))(....)........))).- ( -39.60, z-score = -1.84, R) >droSec1.super_0 5641348 98 - 21120651 ------------CAGGACUCGGUCGUGAAUGCAGUUAAUUAGCUGUGACCUGAGCGGGAAAGUGGAAUUGCAGAUAGAGUUCCGCUGCUGAGGGAAACGGAUGCAUUCCG- ------------...(((...)))(.(((((((.........((((..(((.(((.....(((((((((........)))))))))))).)))...)))).)))))))).- ( -31.50, z-score = -1.53, R) >droSim1.chr3L 12869467 98 - 22553184 ------------CAGGACUCGGUCGUGAAUGCAGUUAAUUAGCUGUGACCUGAGCGGGAAAGUGGAAUUGCAGAUAGAGUUCCGCUGCUGAGGGAAACGGAUGCAUUCCG- ------------...(((...)))(.(((((((.........((((..(((.(((.....(((((((((........)))))))))))).)))...)))).)))))))).- ( -31.50, z-score = -1.53, R) >consensus ____________CAGGACUCGGUCGUGAAUGCAGUUAAUUAGCUGUGACCUGAGCGGGAAAGUGGAAUUGCAGAUAGAGUUCCGCUGCUGAGGGAAACGGAUGCAUUCCG_ .................(((((((......((((((....)))))))))).)))..(((((((((((((........)))))))))((....(....)....)).)))).. (-18.79 = -20.30 + 1.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:36 2011