| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,465,376 – 13,465,429 |
| Length | 53 |
| Max. P | 0.752335 |
| Location | 13,465,376 – 13,465,429 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 87.55 |
| Shannon entropy | 0.21419 |
| G+C content | 0.37736 |
| Mean single sequence MFE | -8.39 |
| Consensus MFE | -6.92 |
| Energy contribution | -7.36 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.752335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13465376 53 + 24543557 CGCCGAGGUCUAUAAACCUACAGUUCAAUAUUCCUAUGUUGAAUUGUUUAUUG .....((((......))))((((((((((((....))))))))))))...... ( -14.10, z-score = -4.20, R) >droEre2.scaffold_4784 13477456 53 + 25762168 CGCCGAGGUCUAUAAACAUACAGCUUAACCUCCCUAAAUUGAACUGUUUAAUG ....(((((..................)))))..(((((......)))))... ( -4.47, z-score = -0.06, R) >droYak2.chr3L 13567884 53 + 24197627 CGUCGAGGUCUAUAAACAUACAGUUCAACAUCCCUAAAUUGAACUGUUUAUCG ...................(((((((((..........)))))))))...... ( -8.30, z-score = -1.47, R) >droSec1.super_0 5640419 53 + 21120651 CGCCGAGGUCUAUAAACAUACAGUUCAAUAUCCCAAAGUUGAAUUGUUUAUCG ...................((((((((((........))))))))))...... ( -8.70, z-score = -1.84, R) >droSim1.chr3L 12868526 53 + 22553184 CGCCGAGGUCUAUAAACAUACAGUUCAAUAUCCCUAUGUUUAACUGUUUAUCG ...................((((((.(((((....))))).))))))...... ( -6.40, z-score = -0.77, R) >consensus CGCCGAGGUCUAUAAACAUACAGUUCAAUAUCCCUAAGUUGAACUGUUUAUCG ...................((((((((((........))))))))))...... ( -6.92 = -7.36 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:35 2011