Locus 7262

Sequence ID	dm3.chr3L
Location	13,452,942 – 13,453,010
Length	68
Max. P	0.650477

overview

Window 8

Location	13,452,942 – 13,453,010
Length	68
Sequences	5
Columns	68
Reading direction	reverse
Mean pairwise identity	90.69
Shannon entropy	0.15562
G+C content	0.56928
Mean single sequence MFE	-22.74
Consensus MFE	-20.10
Energy contribution	-19.70
Covariance contribution	-0.40
Combinations/Pair	1.12
Mean z-score	-1.43
Structure conservation index	0.88
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.34
SVM RNA-class probability	0.650477
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 13452942 68 - 24543557
GGACAAGGCUGGGUCAUGCAGGAGUGCCUCUGAUUUAUGCGGGGGCACAUACAUGGUGAUGUAGUACG
.......((((.(((((.(((..(((((((((.......)))))))))...).))))))).))))... ( -24.30, z-score =  -2.25, R)
>droSim1.chr3L 12856180 68 - 22553184
GGACAAGGCUGGGUCAUGCAGGAGUGCCUCUGAUUUAUGCGGGGGCACAUACAUGGGUGUGUAGUACG
.......((((.(.(((.(((..(((((((((.......)))))))))...).)).)))).))))... ( -22.50, z-score =  -1.29, R)
>droSec1.super_0 5628143 68 - 21120651
GGACAAGGCUGGGUCAUGCAGGAGUGCCUCUGAUUUAUGCGGGGGCACAUACAUGGGUGUGUAGUACG
.......((((.(.(((.(((..(((((((((.......)))))))))...).)).)))).))))... ( -22.50, z-score =  -1.29, R)
>droYak2.chr3L 13555438 65 - 24197627
GGACGAGGCCGGGUCAUGCAGGAGUGCCUCUGAUUUAUGCGGGGGCACAUACAUGGCUAUGUACG---
((......)).(((((((.....(((((((((.......)))))))))...))))))).......--- ( -23.10, z-score =  -1.59, R)
>droEre2.scaffold_4784 13465066 65 - 25762168
GGACGAGGCCGGGUCAUGCAGGAGUGCCUCUGAUUUAUGCGGGGGCACAUACGUGGGUAUGUACG---
((......))..(((((((.(..(((((((((.......)))))))))...)....))))).)).--- ( -21.30, z-score =  -0.76, R)
>consensus
GGACAAGGCUGGGUCAUGCAGGAGUGCCUCUGAUUUAUGCGGGGGCACAUACAUGGGUAUGUAGUACG
.(((........)))........(((((((((.......))))))))).(((((....)))))..... (-20.10 = -19.70 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:34 2011