| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,451,209 – 13,451,324 |
| Length | 115 |
| Max. P | 0.538312 |
| Location | 13,451,209 – 13,451,324 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 78.58 |
| Shannon entropy | 0.38014 |
| G+C content | 0.43342 |
| Mean single sequence MFE | -33.92 |
| Consensus MFE | -18.88 |
| Energy contribution | -17.72 |
| Covariance contribution | -1.16 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.538312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13451209 115 + 24543557 ---CAUAAUGCAGGGAAAUAA--UUGAAAGAGUUAUUUGCAUGCACUGUUGGAUACAUGAUACCUGGCCGUGUGUUCGAUUAGGCUUGUGUA-AGCCCAGAGAGAAGCUCUGAUGGAUGCA ---.....((((.(.((((((--((.....)))))))).).))))..((((((((((((.........))))))))))))..(((((....)-))))(((((.....)))))......... ( -32.40, z-score = -1.35, R) >droEre2.scaffold_4784 13463339 103 + 25762168 ------------------UACCAUAGUGCAUACAACUUGCCUGCAGUGUUGGCUACAUGAUACCUGGCCAUGUGUUUGAUUGGGCUUGUUUGUAACCAAAAGAGAAACUCUGACGGAUGCA ------------------........((((((((((..((((.(((...((((((.........)))))).....)))...))))..).))))).((...((((...))))...)).)))) ( -24.80, z-score = 0.43, R) >droYak2.chr3L 13553687 119 + 24197627 UGCCAUAAUUCAGGGAAAGAGC-UUCAAAAUGUUAUUUGCCUACAAUGUUGGAUACAUGAUACCUGGCCAUGUGUUUGAUUAGGCUUGUGUA-AGCCAAAAGAGAGACUCUGAUGGAUGCA .(((.......(((.(((.(((-........))).))).))).....((..((((((((.........))))))))..))..)))...((((-..(((..((((...))))..))).)))) ( -29.60, z-score = -0.49, R) >droSec1.super_0 5626440 119 + 21120651 UACCAUAAUGCAGGGAAAUAUC-UUGAAAGAGUCGUUUGCCUGCUCAGUUGGAUACAUGAUACCUGGCCGUGUGUUUGAUUAGGCUUGUGUA-AGCCCAGAGAGAAGCUCUGAUGGAUGCA ..((((...(((((.((((..(-((....)))..)))).)))))..(((..((((((((.........))))))))..))).(((((....)-))))(((((.....)))))))))..... ( -41.50, z-score = -3.16, R) >droSim1.chr3L 12854431 119 + 22553184 UACCAUAAUGCAGGAAUAUAUC-UUGAAAGAGUUGUUUGCCUGCUCUGUUGGAUACAUGAUACCUGGUCGUGUGUUUGAUUAGGCUUGUGUA-AGCCCAGAGAGAAGCUCUGAUGGAUGCA ..((((...(((((...(((.(-((....))).)))...)))))...((..((((((((((.....))))))))))..))..(((((....)-))))(((((.....)))))))))..... ( -41.30, z-score = -3.79, R) >consensus U_CCAUAAUGCAGGGAAAUAUC_UUGAAAGAGUUAUUUGCCUGCACUGUUGGAUACAUGAUACCUGGCCGUGUGUUUGAUUAGGCUUGUGUA_AGCCCAGAGAGAAGCUCUGAUGGAUGCA .................................(((..(((((....((((((((((((.........)))))))))))))))))..))).....((...((((...))))...))..... (-18.88 = -17.72 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:33 2011