| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,450,801 – 13,450,869 |
| Length | 68 |
| Max. P | 0.837650 |
| Location | 13,450,801 – 13,450,869 |
|---|---|
| Length | 68 |
| Sequences | 7 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 72.77 |
| Shannon entropy | 0.51521 |
| G+C content | 0.56268 |
| Mean single sequence MFE | -22.73 |
| Consensus MFE | -10.79 |
| Energy contribution | -11.14 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837650 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 13450801 68 - 24543557 UUUCAUUGUUCUGCCAUCUGACGUUGAUGGCGGAGCAGUAGUGACUAUUCAGGGGGGCGACGGAGGAG ((((((((((((((((((.......)))))))))))))).((..((......))..))...))))... ( -25.30, z-score = -2.86, R) >droEre2.scaffold_4784 13462870 68 - 25762168 UUUCAUUGUUUCGCCUUCUGACAUUGAUGGUGGAGCAUGAGCGACUAUUCCGGGGGGCGGCGGAGGAG .(((((.((((((((.((.......)).)))))))))))))...((.(((((........))))).)) ( -20.60, z-score = -0.55, R) >droYak2.chr3L 13553173 67 - 24197627 UUUCAUUGUUUCGCCUUCUGACAUUGAUGGUGGAGCAGGAGCGACUAUUCC-GGGGGCGGCGGAGGAG .(((.((((((((((.((.......)).)))))))))))))...((.((((-(.......))))).)) ( -19.80, z-score = -0.27, R) >droSec1.super_0 5626027 66 - 21120651 UUUCAUUGUUCUGCCAUCUGACGUUGAUGGCGGAGC--UAGUGACUACUCAGGCGGGCGGCUGGGAAG ..((((((((((((((((.......)))))))))))--.)))))...(((((.(....).)))))... ( -30.30, z-score = -4.12, R) >droSim1.chr3L 12854016 68 - 22553184 UUUCAUUGUUCUGCCGUCUGACGUAGAUGGCGGAGCAGUAAUGACUAUUCAGGCGGGCGGCUGGGAAG .(((((((((((((((((((...)))))))))))))))).........((((.(....).))))))). ( -28.00, z-score = -3.43, R) >dp4.chrXR_group8 5151077 61 + 9212921 UUUCAUUGUUUCGCCAUCUGACAUUGAUGGGGGGCGUCGCAUGGUGG--CAGGAGGCAGGUGG----- ...((((((..(.(((((.......))))))..))(((((...))))--)........)))).----- ( -17.70, z-score = -0.47, R) >droPer1.super_29 804840 61 + 1099123 UUUCAUUGUUUCGCCAUCUGACAUUGAGGGGGGGCGUCGCAUGGUGG--CAGGAGGCAGGUGG----- ...((((((((((((.(((........)))..)))(((((...))))--)..)))))).))).----- ( -17.40, z-score = -0.49, R) >consensus UUUCAUUGUUUCGCCAUCUGACAUUGAUGGCGGAGCAGGAGUGACUAUUCAGGGGGGCGGCGGAGGAG ..(((((((((((((.((.......)).))))))))...)))))...(((((........)))))... (-10.79 = -11.14 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:32 2011