| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,127,088 – 5,127,206 |
| Length | 118 |
| Max. P | 0.862364 |
| Location | 5,127,088 – 5,127,206 |
|---|---|
| Length | 118 |
| Sequences | 15 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 77.13 |
| Shannon entropy | 0.56291 |
| G+C content | 0.43559 |
| Mean single sequence MFE | -34.51 |
| Consensus MFE | -16.42 |
| Energy contribution | -17.23 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.86 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5127088 118 - 23011544 UUGGUCUUACAUAACAUUUUAUGACUGAUGUUUGAUAUGCCAUGGAGCUUGUCCAAUUGCUCCUGGCACUGUGUCUCGAAUUGUUGGGCAUUCUGUUGCAUGGCAACGGCUUCUUCGA ..((((...((.((((((........))))))))...(((((((.(((.((((((((...((..(((.....)))..))...))))))))....))).)))))))..))))....... ( -35.70, z-score = -2.07, R) >droSim1.chr2L 4938395 118 - 22036055 UUGGUCUUACAUAACAUUUUAUGACUGAUGUUUGAUAUGCCAUGGAGCUUGUCCAAUUGCUCCUGGCACUGUGUCUCGAAUUGUUGGGCAUUCUGUUGCAUGGCAACGGCUUCUUCGA ..((((...((.((((((........))))))))...(((((((.(((.((((((((...((..(((.....)))..))...))))))))....))).)))))))..))))....... ( -35.70, z-score = -2.07, R) >droSec1.super_5 3213685 118 - 5866729 UUGGUCUUACAUAACAUUUUAUGACUGAUGUUUGAUAUGCCAUGGAGCUUGUCCAAUUGCUCCUGGCACUGUGUCUCGAAUUGUUGGGCAUUCUGUUGCAUGGCAACGGCUUCUUCGA ..((((...((.((((((........))))))))...(((((((.(((.((((((((...((..(((.....)))..))...))))))))....))).)))))))..))))....... ( -35.70, z-score = -2.07, R) >droYak2.chr2L 11927219 118 + 22324452 UUGGUCUUACAUAACAUUUUAUGACUGAUGUUUGAUAUGCCAUGGAGCUUGUCCAAUUGCUCCUGGCACUGUGUCUCGAAUUGUUGGGCAUUCUGUUGCAUGGCAACGGCUUCUUCGA ..((((...((.((((((........))))))))...(((((((.(((.((((((((...((..(((.....)))..))...))))))))....))).)))))))..))))....... ( -35.70, z-score = -2.07, R) >droEre2.scaffold_4929 5208175 118 - 26641161 UUGGUCUUACAUAACAUUUUAUGACUGAUGUUUGAUAUGCCAUGGAGCUUGUCCAAUUGCUCCUGGCACUGUGUCUCGAAUUGUUGGGCAUUCUGUUGCAUGGCAACGGCUUCUUCGA ..((((...((.((((((........))))))))...(((((((.(((.((((((((...((..(((.....)))..))...))))))))....))).)))))))..))))....... ( -35.70, z-score = -2.07, R) >droAna3.scaffold_12916 6145854 118 + 16180835 UUCGUCUUACACAACAUUUUAUGACUGAUGUUGGAUAUGCCAUGGAGCUUGUCCAACUGCUCCUGGCAUUGUGUCUCGAAUUGUUGGGCAUUUUGUUGCAUGGCAACGGCUUCUUCGA ...(((.....(((((((........)))))))....(((((((.(((.((((((((...((..(((.....)))..))...))))))))....))).)))))))..)))........ ( -39.90, z-score = -3.21, R) >dp4.chr4_group3 8915677 118 + 11692001 UUCGUUUUACACAACAUUUUAUGACUGAUGUUCGAGAUGCCAUGGAGCUUGUCCAAUUGCUCCUGGCAUUGUGAUUCAAAUUGUUGGGCAUUCUGUUGCAUGGCAACGGCUUCUUCAA ...(..((((..((((((........))))))...(((((((.(((((..........))))))))))))))))..)......(((((.(..(((((((...)))))))..).))))) ( -33.70, z-score = -1.44, R) >droPer1.super_1 6021824 118 + 10282868 UUCGUUUUACACAACAUUUUAUGACUGAUGUUCGAGAUGCCAUGGAGCUUGUCCAAUUGCUCCUGGCAUUGUGAUUCAAAUUGUUGGGCAUUCUGUUGCAUGGCAACGGCUUCUUCAA ...(..((((..((((((........))))))...(((((((.(((((..........))))))))))))))))..)......(((((.(..(((((((...)))))))..).))))) ( -33.70, z-score = -1.44, R) >droWil1.scaffold_180772 7750499 118 + 8906247 UUGGUUUUGCAUAACAUUUUAUGACUGAUAUUGGAAAUGCCAUGGAGCUUGUCCAAUUGCUCCUGGCAUUGUGUUUCAAAUUGUUGGGCAUUCUGUUGCAUGGCAACGGCUUCUUCAA .......(((.(((((.(((..(((..........(((((((.(((((..........))))))))))))..)))..))).))))).)))..(((((((...)))))))......... ( -33.30, z-score = -1.08, R) >droVir3.scaffold_12963 13732731 118 + 20206255 UUGGUUUUGCAUAACAUUUUAUGACUGAUGUUUGAUAUGCCAUGGAGUUUGUCCAAUUGCUCCAGGCAUUGUGUUUCAAAUUGUUUGGCAUUUUGUUGCAUGGCAACGGCUUCUUCAA ...((..((((..(((....(((.(..(.((((((.(((((.((((((..........)))))))))))......))))))...)..))))..)))))))..)).............. ( -30.10, z-score = -0.39, R) >droMoj3.scaffold_6500 6733428 118 + 32352404 UUGGUUUUGCAUAACAUUUUAUGACUGAUGUUUGAUAUGCCAUGGAGUUUGUCCAAUUGCUCCAGGCAGUGUGUUUCAAAUUGUUUGGCAUUUUGUUGCAAGGCAACGGCUUCAUCAA ...((((((((..(((....(((.(..(.((((((..((((.((((((..........)))))))))).......))))))...)..))))..))))))))))).............. ( -31.90, z-score = -0.58, R) >droGri2.scaffold_15252 7491758 118 + 17193109 UUGGUUUUGCAUAACAUUUUAUGACUGAUGCUUGAUAUGCCAUGGAGUUUGUCCAGUUGGUCCAGGCAUUGUGUUUCAAAUUGUUUGGCAUUUUGUUGCAUGGCAACGGCUUCGUCAA .......(((..((((.(((..((((((((((((....((((((((.....))))..)))).))))))))).)))..))).))))..)))..(((((((...)))))))......... ( -29.40, z-score = 0.36, R) >anoGam1.chr3R 16594430 118 + 53272125 UUCACGCCGUACCGGAUGUUCUGUGAGCUCUUGAUCACGUUCUGCAGCUCGUCCAUCUUGCCCUCGCACUGCUCGUUAAACGUUUCCAAACGGCCCUGGUAGGCGCGUGCUUCCGGCA .....((((....(((((..((((((((..........)))).))))..)))))...........((((.((........((((....))))(((......)))))))))...)))). ( -36.40, z-score = -0.79, R) >apiMel3.Group1 9393254 118 + 25854376 GAUGUUUUUCCUGUUAUUCGUUGGCUGAUCAAAGAUAGAUCUUGGAUCUGAGGGAAAUGUUGUUGGCAUCGUGUUUCAAAUGCUCUGGCUGUUUCCAACAUGUGAGCUGCCUGAGCUA ((((((((((((((((.....)))).((((.((((....)))).))))...)))))).......))))))...........((((.(((.(((..(.....)..))).))).)))).. ( -32.21, z-score = -0.88, R) >triCas2.chrUn_44 187433 118 - 525920 UUGGUUUUCGACGUGAUUUGUUGGCUCAAACCUGCAACGUUUUGGAUUUUGCCAAAUUGUGAGUCACACUCUUUGGCAAAAUCCUUGUUCUCCCUUUGGAGGAUUAGGGCUUCCUCGA ..(((((((((((.....))))))...))))).((........(((((((((((((..(((.....)))..)))))))))))))..(((((((....)))))))....))........ ( -38.60, z-score = -2.89, R) >consensus UUGGUUUUACAUAACAUUUUAUGACUGAUGUUUGAUAUGCCAUGGAGCUUGUCCAAUUGCUCCUGGCACUGUGUUUCAAAUUGUUGGGCAUUCUGUUGCAUGGCAACGGCUUCUUCGA ...(((......((((((........)))))).....(((((((.(((.(((((((........(((.....)))........)))))))....))).)))))))..)))........ (-16.42 = -17.23 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:08 2011