| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,391,223 – 13,391,318 |
| Length | 95 |
| Max. P | 0.973481 |
| Location | 13,391,223 – 13,391,318 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 77.27 |
| Shannon entropy | 0.39924 |
| G+C content | 0.35272 |
| Mean single sequence MFE | -19.64 |
| Consensus MFE | -11.56 |
| Energy contribution | -10.92 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973481 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13391223 95 - 24543557 GACACUUGUGUCAAUUUACAAUUACGCGUAGACCAUGCGGGUUUUUCAAAAAAAAAAUUGUCUCACAUUUUUUUCACCCAUUUCUGUGUUUUACU ((((....))))((..((((.....((((.....))))((((.........((((((.((.....)).)))))).)))).....))))..))... ( -14.70, z-score = -0.67, R) >droSim1.chr3L 12788819 91 - 22553184 GACACUUGUGUCAAUUUACAAUUACGCGUAGACCAUGCGGGGUUUUC---GAAAAAAUUGUCUCAUA-UUUUUUCACCCAUUUAUGUGUUUUACU ((((....))))((..((((....(((((.....)))))((((....---((((((((........)-))))))))))).....))))..))... ( -21.10, z-score = -2.53, R) >droSec1.super_0 5565949 91 - 21120651 GACACUUGUGUCAAUUUACAAUUACGCGUAGACCAUGCGGGGUUUUC---GAAAAAAUUGUCUCAUA-UUUUUUCACCCAUUUAUGUGUUUUACU ((((....))))((..((((....(((((.....)))))((((....---((((((((........)-))))))))))).....))))..))... ( -21.10, z-score = -2.53, R) >droEre2.scaffold_4784 13403141 84 - 25762168 GACACUUGUGUCAAUUUACAAUUACGCGU---UUACGCGGGUUUU-----CGAAAAAUUGUCUCACA-UUUUUUCACCCAUUUC--UGUUGUACU ((((....))))....((((((...(((.---...)))((((...-----.((((((.((.....))-.)))))))))).....--.)))))).. ( -21.60, z-score = -3.87, R) >droWil1.scaffold_180949 3418704 79 + 6375548 GACACUUGUGUCAAUUUACAA-UAUGCGUAGAGAGCGUAUGUUG------GGAAAAGGUUUUU-----UUUUUUCUUCUGUUUGUUGGUCU---- ((((....))))......(((-(((((((.....))))))))))------((((((((.....-----))))))))...............---- ( -19.70, z-score = -2.41, R) >consensus GACACUUGUGUCAAUUUACAAUUACGCGUAGACCAUGCGGGUUUUUC___GAAAAAAUUGUCUCACA_UUUUUUCACCCAUUUAUGUGUUUUACU ((((....))))............(((((.....)))))...........(((((((.((.....)).))))))).................... (-11.56 = -10.92 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:28 2011