| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,364,672 – 13,364,774 |
| Length | 102 |
| Max. P | 0.713129 |
| Location | 13,364,672 – 13,364,774 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 75.62 |
| Shannon entropy | 0.46787 |
| G+C content | 0.33786 |
| Mean single sequence MFE | -23.43 |
| Consensus MFE | -11.03 |
| Energy contribution | -12.84 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.713129 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13364672 102 - 24543557 UUAUCCUUCAUGCCUACUUUUUCGGGGCUCUUUUGAACUCUAAAGAAGUGUGCAUUGAAAUUUCCGUUUGUAG-UUUAGGCUAUAUUUUGGGUUUGAACGGAA ...((((((((((.((((((((..(((.((....)).)))..)))))))).))).)))).............(-((((((((........)))))))))))). ( -30.10, z-score = -3.17, R) >droAna3.scaffold_13337 11171709 94 + 23293914 UUUUUCUUUACACCUAC-AAUUCGUGGUGUUUAUACACUUAGAAAAAUUAUAAA-AAAAAGAUAUGUCUAGAGCCU---AUUACAUUUCGAUAAUAGAC---- (((((((..(((((.((-.....)))))))..........))))))).......-...................((---((((........))))))..---- ( -11.30, z-score = -0.17, R) >droEre2.scaffold_4784 13376678 102 - 25762168 UUAUCCUUCAUAGCUACUUUUUCGGGGCU-UUUUAUACUCUGAAGAAUGUUGCAUUGAAAUUUCUGUUUGUAGUUUUGAGUUAUAAUUUGGGUUUCAGCAGAA ......((((..((.((((((((((((..-.......)))))))))).)).))..))))..(((((((.(....((..(((....)))..))...)))))))) ( -21.30, z-score = -0.96, R) >droYak2.chr3L 13461686 103 - 24197627 UUAUCCUUCAUAGCUGCUUUUUCGGGGCUCUUUUAUGCUCUGAAGAAUGGUGCAUUGAAAUUUCCGUUUGUAGUUUUAACUUAUAAUAUGGGUUUCAGCAGAA .............(((((((((((((((........)))))))))))........((((((..(((((((((((....)).))))).)))))))))))))).. ( -26.80, z-score = -2.13, R) >droSec1.super_0 5539685 102 - 21120651 UUAUUCUUCAUACCUACUUUUUCGGGGCUCUUUUGAACUCUGAAGAAAUGUGCAUUGAAAUUUCCGUUUGUAG-UUUAGGCUAUAAUUUGAGUUUGAACGGAA ......((((....(((((((((((((.((....)).))))))))))..)))...))))..((((((((((((-(....)))))...........)))))))) ( -22.60, z-score = -1.36, R) >droSim1.chr3L 12762229 102 - 22553184 UUAUCCUUCAUACCUACUUUUUCGGGGCUCUUUUGAACUCUGAAGAAAUGUGCAUUGAAAUUUCCGUUUGUAG-UUUAGGCUAUAAUUUGGGUUUGAACGGAA ...(((((((.(((((.((((((((((.((....)).))))))))))....................((((((-(....)))))))..))))).)))).))). ( -28.50, z-score = -2.98, R) >consensus UUAUCCUUCAUACCUACUUUUUCGGGGCUCUUUUAAACUCUGAAGAAUUGUGCAUUGAAAUUUCCGUUUGUAG_UUUAGGCUAUAAUUUGGGUUUGAACGGAA ......((((.......((((((((((.((....)).))))))))))........))))...((((((((....((((((......))))))..)))))))). (-11.03 = -12.84 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:25 2011